Wall clock time and date at job start Mon Mar 30 2020 02:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00018 * 2 1 4 4 H 1.48497 * 109.47226 * 270.00378 * 3 2 1 5 5 H 1.48498 * 109.47075 * 30.00224 * 3 2 1 6 6 H 1.48493 * 109.47200 * 150.00339 * 3 2 1 7 7 C 1.37878 * 119.99859 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99704 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.46968 * 180.02562 * 9 7 2 11 11 O 1.20758 * 120.00159 * 0.02562 * 10 9 7 12 12 C 1.50705 * 120.00047 * 179.97438 * 10 9 7 13 13 C 1.53175 * 109.53841 * 90.44425 * 12 10 9 14 14 C 1.53092 * 109.16179 * 176.85093 * 13 12 10 15 15 O 1.42910 * 109.41107 * 302.39040 * 14 13 12 16 16 C 1.42900 * 114.09727 * 61.16189 * 15 14 13 17 17 C 1.53090 * 109.41229 * 298.83586 * 16 15 14 18 18 H 0.97003 * 120.00041 * 359.97438 * 1 2 3 19 19 H 1.08995 * 109.47286 * 59.99925 * 9 7 2 20 20 H 1.09004 * 109.46879 * 299.99869 * 9 7 2 21 21 H 1.08997 * 109.61189 * 330.22789 * 12 10 9 22 22 H 1.09006 * 109.52647 * 296.75393 * 13 12 10 23 23 H 1.08998 * 109.52537 * 56.94285 * 13 12 10 24 24 H 1.08998 * 109.48147 * 182.40843 * 14 13 12 25 25 H 1.08997 * 109.48550 * 62.37144 * 14 13 12 26 26 H 1.09003 * 109.47953 * 178.86010 * 16 15 14 27 27 H 1.08995 * 109.49265 * 58.82602 * 16 15 14 28 28 H 1.09001 * 109.52724 * 297.70937 * 17 16 15 29 29 H 1.09000 * 109.52338 * 177.51272 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4175 -3.4239 -0.0001 12 6 1.7279 -5.0655 0.0000 13 6 1.5673 -5.5526 -1.4433 14 6 1.1325 -7.0204 -1.4327 15 8 2.0978 -7.7966 -0.7199 16 6 2.2561 -7.4170 0.6486 17 6 2.7360 -5.9651 0.7217 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8902 20 1 0.6247 -2.5571 0.8897 21 1 0.7659 -5.1132 0.5102 22 1 0.8105 -4.9522 -1.9483 23 1 2.5181 -5.4581 -1.9677 24 1 1.0580 -7.3848 -2.4573 25 1 0.1623 -7.1088 -0.9439 26 1 2.9911 -8.0670 1.1235 27 1 1.3007 -7.5105 1.1649 28 1 3.7105 -5.8788 0.2410 29 1 2.8151 -5.6596 1.7650 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052175993.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:27 Heat of formation + Delta-G solvation = -105.808751 kcal Electronic energy + Delta-G solvation = -12653.348357 eV Core-core repulsion = 10347.858993 eV Total energy + Delta-G solvation = -2305.489364 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.62459 -37.82369 -33.34362 -32.96703 -31.01077 -29.13723 -25.83190 -23.52347 -23.20972 -20.36711 -18.56794 -16.50171 -15.94599 -15.88484 -15.23387 -14.68568 -14.46600 -14.09186 -13.48907 -13.07669 -12.96018 -12.16841 -12.05281 -11.26804 -11.21536 -11.08586 -10.84914 -10.67151 -10.44141 -10.29223 -10.01603 -9.63174 -9.30944 -8.46085 -8.24684 -6.08033 -4.09007 2.99581 3.31999 3.37554 3.44248 3.93709 4.41997 4.78877 4.94087 4.99170 5.12381 5.29408 5.33437 5.42713 5.59233 5.72595 5.73124 5.86335 5.98913 6.11942 6.29388 6.47697 6.71055 7.21156 7.23966 7.32889 7.90907 8.20188 8.68447 9.00578 9.56322 11.03889 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.074108 B = 0.007737 C = 0.007413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.738185 B = 3618.256744 C = 3776.102730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.026 4.026 10 C 0.362 3.638 11 O -0.463 6.463 12 C -0.145 4.145 13 C -0.141 4.141 14 C 0.064 3.936 15 O -0.387 6.387 16 C 0.063 3.937 17 C -0.144 4.144 18 H 0.262 0.738 19 H 0.052 0.948 20 H 0.051 0.949 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 -12.279 -0.300 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.555 4.555 8 H 0.090 0.910 9 C -0.063 4.063 10 C 0.237 3.763 11 O -0.337 6.337 12 C -0.165 4.165 13 C -0.179 4.179 14 C -0.013 4.013 15 O -0.306 6.306 16 C -0.014 4.014 17 C -0.182 4.182 18 H 0.071 0.929 19 H 0.070 0.930 20 H 0.069 0.931 21 H 0.109 0.891 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.651 -12.189 -0.379 12.212 hybrid contribution 0.017 1.220 0.162 1.231 sum 0.667 -10.969 -0.216 10.992 Atomic orbital electron populations 1.69958 1.06052 1.26902 1.50981 1.25008 0.94886 0.99466 0.95093 0.86474 0.79889 0.82804 0.78206 1.20578 1.21207 1.19698 1.21199 0.94119 0.89714 1.50516 0.91041 1.19612 0.95123 0.92028 0.99509 1.25148 0.90870 0.91015 0.69238 1.90222 1.19995 1.87388 1.36054 1.21911 1.00718 0.96483 0.97363 1.22064 1.03366 0.96700 0.95799 1.22580 0.91197 0.90525 0.96990 1.87891 1.61399 1.58045 1.23268 1.22581 1.00438 0.95409 0.82950 1.22092 1.00159 0.94580 1.01376 0.92883 0.93016 0.93080 0.89146 0.89952 0.90776 0.88849 0.93040 0.89040 0.93256 0.90216 0.90868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.68 15 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 3 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.27 -6.67 7.11 56.52 0.40 -6.26 15 7 C -0.52 -14.96 8.92 -34.44 -0.31 -15.27 15 8 H 0.07 2.14 6.76 -52.49 -0.35 1.78 15 9 C -0.03 -0.66 5.38 -29.04 -0.16 -0.81 15 10 C 0.36 7.91 6.22 -29.03 -0.18 7.73 15 11 O -0.46 -11.47 15.22 6.00 0.09 -11.38 15 12 C -0.15 -2.41 2.55 -91.59 -0.23 -2.64 15 13 C -0.14 -2.08 5.40 -26.59 -0.14 -2.23 15 14 C 0.06 0.79 6.84 37.21 0.25 1.04 15 15 O -0.39 -5.44 10.77 -35.23 -0.38 -5.81 15 16 C 0.06 0.79 6.84 37.20 0.25 1.04 15 17 C -0.14 -2.17 5.08 -26.59 -0.13 -2.30 15 18 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 19 H 0.05 1.32 8.14 -51.93 -0.42 0.90 15 20 H 0.05 1.31 8.14 -51.93 -0.42 0.89 15 21 H 0.09 1.37 8.12 -51.93 -0.42 0.94 15 22 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.07 1.18 8.14 -51.93 -0.42 0.75 15 24 H 0.09 0.98 8.14 -51.93 -0.42 0.56 15 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 26 H 0.09 0.98 8.14 -51.93 -0.42 0.55 15 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 28 H 0.08 1.33 7.76 -51.93 -0.40 0.92 15 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 LS Contribution 247.05 15.07 3.72 3.72 Total: -1.00 -31.54 247.05 -5.71 -37.25 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -4.12 Total: -3.23 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -0.74 Total: -11.92 kcal Atomic # 7 Polarization: -26.42 SS G_CDS: 0.74 Total: -25.68 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.29 Total: -17.20 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -31.54 -5.71 -37.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052175993.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.558 kcal (2) G-P(sol) polarization free energy of solvation -31.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds