Wall clock time and date at job start Mon Mar 30 2020 01:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.47212 * 2 1 4 4 C 1.42896 * 113.99973 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47006 * 180.02562 * 4 3 2 6 6 N 1.30748 * 126.28605 * 89.97514 * 5 4 3 7 7 C 1.36357 * 105.50998 * 179.97438 * 6 5 4 8 8 C 1.41739 * 126.58829 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00003 * 359.97438 * 8 7 6 10 10 C 1.39976 * 120.00030 * 179.97438 * 8 7 6 11 11 N 1.30741 * 119.99805 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99725 * 179.97438 * 10 8 7 13 13 H 1.48494 * 109.47295 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46854 * 120.00615 * 12 10 8 15 15 H 1.48499 * 109.47400 * 239.99970 * 12 10 8 16 16 N 1.31870 * 106.82505 * 0.02562 * 7 6 5 17 17 O 1.21273 * 109.89785 * 359.97438 * 16 7 6 18 18 H 1.08996 * 109.46715 * 179.97438 * 1 2 3 19 19 H 1.09001 * 109.46596 * 299.99440 * 1 2 3 20 20 H 1.09000 * 109.47147 * 59.99457 * 1 2 3 21 21 H 1.09001 * 109.46596 * 240.00559 * 2 1 3 22 22 H 1.08991 * 109.47358 * 120.00677 * 2 1 3 23 23 H 1.08994 * 109.47229 * 60.00497 * 4 3 2 24 24 H 1.09005 * 109.47079 * 299.99940 * 4 3 2 25 25 H 0.97004 * 119.99641 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8195 2.9161 0.0001 6 7 4.0190 3.6632 1.0544 7 6 4.3483 4.8951 0.5713 8 6 4.6568 6.0478 1.3362 9 1 4.6438 5.9994 2.4151 10 6 4.9784 7.2489 0.6934 11 7 4.9937 7.3077 -0.6126 12 14 5.3843 8.7682 1.7016 13 1 5.2967 8.4408 3.1473 14 1 6.7610 9.2225 1.3798 15 1 4.4184 9.8490 1.3789 16 7 4.3246 4.8080 -0.7443 17 8 4.0238 3.6816 -1.0780 18 1 -0.3632 -1.0277 -0.0005 19 1 -0.3632 0.5138 0.8901 20 1 -0.3633 0.5139 -0.8899 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5139 0.8898 23 1 3.8333 0.9768 -0.8908 24 1 3.8341 0.9764 0.8892 25 1 5.2162 8.1401 -1.0581 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073641491.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:45 Heat of formation + Delta-G solvation = -19.490458 kcal Electronic energy + Delta-G solvation = -12155.237466 eV Core-core repulsion = 9749.950801 eV Total energy + Delta-G solvation = -2405.286665 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.34238 -39.08083 -36.49637 -35.17153 -33.24536 -31.71261 -28.77629 -27.83751 -23.95436 -23.65322 -22.70581 -19.39437 -18.46248 -17.85474 -17.32217 -17.00021 -16.64242 -16.03744 -14.96541 -14.42061 -13.86233 -13.32322 -13.24680 -13.13293 -12.94899 -12.50698 -12.30352 -12.16345 -12.11475 -11.92863 -11.30022 -11.22688 -10.62411 -10.26900 -8.67234 -6.83735 0.77074 1.31559 1.37232 1.57083 1.97020 2.19336 2.36958 3.09148 3.21390 3.50829 4.13723 4.23202 4.39009 4.43702 4.51037 4.56038 4.87765 4.99458 5.07582 5.18783 5.30230 5.66293 6.13624 6.17833 6.39096 6.71586 8.27241 8.39014 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.081599 B = 0.007401 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 343.057053 B = 3782.339587 C = 3897.265403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.416 6.416 4 C 0.177 3.823 5 C 0.133 3.867 6 N -0.531 5.531 7 C 0.256 3.744 8 C -0.469 4.469 9 H 0.096 0.904 10 C 0.021 3.979 11 N -0.812 5.812 12 Si 1.014 2.986 13 H -0.251 1.251 14 H -0.260 1.260 15 H -0.262 1.262 16 N -0.458 5.458 17 O 0.015 5.985 18 H 0.102 0.898 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.111 0.889 24 H 0.106 0.894 25 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.789 -10.794 1.204 11.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.336 6.336 4 C 0.099 3.901 5 C -0.090 4.090 6 N -0.274 5.274 7 C 0.005 3.995 8 C -0.509 4.509 9 H 0.114 0.886 10 C -0.197 4.197 11 N -0.441 5.441 12 Si 0.832 3.168 13 H -0.174 1.174 14 H -0.185 1.185 15 H -0.187 1.187 16 N -0.188 5.188 17 O -0.025 6.025 18 H 0.120 0.880 19 H 0.070 0.930 20 H 0.072 0.928 21 H 0.092 0.908 22 H 0.087 0.913 23 H 0.129 0.871 24 H 0.124 0.876 25 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.741 -9.956 0.837 10.668 hybrid contribution 0.240 0.444 0.133 0.522 sum -3.501 -9.511 0.970 10.181 Atomic orbital electron populations 1.21800 0.93094 1.03704 1.02278 1.22830 0.96240 0.81362 1.02214 1.87947 1.19753 1.30021 1.95866 1.20557 0.82645 0.81763 1.05116 1.28816 0.98772 0.98822 0.82601 1.72133 1.22390 1.03049 1.29788 1.23004 0.96574 0.92608 0.87306 1.18934 1.45831 0.91720 0.94465 0.88604 1.27066 0.92415 1.03715 0.96463 1.69980 1.34019 1.29206 1.10913 0.84705 0.78796 0.74644 0.78682 1.17440 1.18483 1.18694 1.75556 1.32195 0.95730 1.15352 1.85103 1.65021 1.16421 1.35995 0.87955 0.93048 0.92764 0.90799 0.91309 0.87087 0.87636 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 10.28 71.98 0.74 -2.11 15 2 C 0.05 1.02 6.66 71.98 0.48 1.50 15 3 O -0.42 -13.65 10.33 -148.98 -1.54 -15.19 15 4 C 0.18 5.65 6.56 71.24 0.47 6.11 15 5 C 0.13 6.36 8.10 88.33 0.72 7.08 15 6 N -0.53 -29.68 11.62 -304.63 -3.54 -33.22 15 7 C 0.26 16.00 7.70 134.75 1.04 17.04 15 8 C -0.47 -28.24 9.52 23.56 0.22 -28.01 15 9 H 0.10 5.47 7.85 -2.91 -0.02 5.45 15 10 C 0.02 1.14 5.49 85.28 0.47 1.61 15 11 N -0.81 -47.70 11.98 21.83 0.26 -47.44 15 12 Si 1.01 40.77 29.56 68.60 2.03 42.80 15 13 H -0.25 -9.64 7.11 99.48 0.71 -8.93 15 14 H -0.26 -9.85 7.11 99.48 0.71 -9.14 15 15 H -0.26 -10.01 7.11 99.48 0.71 -9.31 15 16 N -0.46 -28.73 10.49 -60.21 -0.63 -29.36 15 17 O 0.01 0.80 11.28 73.48 0.83 1.63 15 18 H 0.10 1.24 8.14 -2.39 -0.02 1.22 15 19 H 0.05 1.08 8.14 -2.39 -0.02 1.06 15 20 H 0.05 1.11 8.14 -2.39 -0.02 1.09 15 21 H 0.07 1.19 8.14 -2.39 -0.02 1.17 15 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 15 23 H 0.11 2.68 8.14 -2.39 -0.02 2.66 15 24 H 0.11 2.84 8.14 -2.38 -0.02 2.82 15 25 H 0.29 15.06 8.29 -92.71 -0.77 14.29 15 Total: -1.00 -76.76 234.02 2.74 -74.02 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: 1.19 Total: 3.54 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 4.13 Total: 3.22 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -3.91 Total: -110.03 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.71 Total: -13.55 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -76.76 2.74 -74.02 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641491.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.531 kcal (2) G-P(sol) polarization free energy of solvation -76.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds