Wall clock time and date at job start Mon Mar 30 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99575 * 2 1 4 4 C 1.53003 * 109.47151 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47213 * 180.02562 * 4 3 2 6 6 N 1.30748 * 126.28605 * 89.97347 * 5 4 3 7 7 C 1.36357 * 105.50998 * 179.97438 * 6 5 4 8 8 C 1.41739 * 126.58829 * 180.02562 * 7 6 5 9 9 H 1.08005 * 120.00003 * 359.97438 * 8 7 6 10 10 C 1.39976 * 120.00030 * 179.97438 * 8 7 6 11 11 N 1.30741 * 119.99805 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99725 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46783 * 90.00476 * 12 10 8 14 14 H 1.48505 * 109.47288 * 210.00066 * 12 10 8 15 15 H 1.48499 * 109.47474 * 330.00318 * 12 10 8 16 16 N 1.31870 * 106.82505 * 0.02562 * 7 6 5 17 17 O 1.21273 * 109.89785 * 359.97438 * 16 7 6 18 18 H 1.08998 * 109.47392 * 299.99480 * 1 2 3 19 19 H 1.08992 * 109.47309 * 59.99772 * 1 2 3 20 20 H 1.09008 * 109.46484 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47411 * 60.00421 * 3 2 1 22 22 H 1.09006 * 109.47474 * 300.00087 * 3 2 1 23 23 H 1.08994 * 109.47262 * 60.00071 * 4 3 2 24 24 H 1.09005 * 109.46840 * 299.99641 * 4 3 2 25 25 H 0.97004 * 119.99641 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1482 2.5616 0.0000 6 7 4.4629 3.2680 1.0542 7 6 4.9819 4.4327 0.5711 8 6 5.4680 5.5225 1.3360 9 1 5.4475 5.4768 2.4149 10 6 5.9745 6.6581 0.6931 11 7 5.9989 6.7136 -0.6129 12 14 6.6144 8.0946 1.7013 13 1 8.0628 7.9051 1.9690 14 1 6.4115 9.3578 0.9473 15 1 5.8778 8.1628 2.9889 16 7 4.9448 4.3504 -0.7445 17 8 4.4705 3.2853 -1.0782 18 1 -0.3634 0.5137 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3632 -1.0278 -0.0005 21 1 1.6885 1.8464 0.8900 22 1 1.6885 1.8465 -0.8900 23 1 3.8567 0.6441 -0.8908 24 1 3.8574 0.6438 0.8892 25 1 6.3496 7.5007 -1.0584 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073641509.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:33 Heat of formation + Delta-G solvation = -21.850583 kcal Electronic energy + Delta-G solvation = -12135.874961 eV Core-core repulsion = 9730.485953 eV Total energy + Delta-G solvation = -2405.389008 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.31756 -38.94270 -36.47981 -35.45132 -33.92813 -30.83587 -28.65742 -27.36947 -24.72954 -23.88510 -22.36069 -19.26346 -18.26274 -17.81391 -17.33072 -16.95849 -16.46738 -15.90907 -15.19106 -14.84700 -14.31643 -13.29828 -13.13281 -13.11362 -13.00262 -12.59087 -12.23956 -12.14515 -12.11492 -11.96167 -11.22133 -11.17064 -10.66044 -10.19126 -8.66318 -6.82149 0.90976 1.34166 1.37251 1.55026 2.01065 2.19191 2.34981 3.09151 3.20210 3.57328 4.03613 4.09367 4.36849 4.51392 4.56797 4.58943 4.75298 4.87485 4.88661 5.13785 5.22299 5.70914 6.12890 6.14901 6.41925 6.73123 8.30399 8.41461 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.084778 B = 0.007242 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 330.194973 B = 3865.287593 C = 3988.947121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.077 3.923 4 C -0.006 4.006 5 C 0.141 3.859 6 N -0.542 5.542 7 C 0.258 3.742 8 C -0.470 4.470 9 H 0.095 0.905 10 C 0.022 3.978 11 N -0.812 5.812 12 Si 1.011 2.989 13 H -0.259 1.259 14 H -0.265 1.265 15 H -0.253 1.253 16 N -0.462 5.462 17 O 0.010 5.990 18 H 0.046 0.954 19 H 0.049 0.951 20 H 0.108 0.892 21 H 0.049 0.951 22 H 0.057 0.943 23 H 0.121 0.879 24 H 0.115 0.885 25 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -7.390 1.125 10.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C -0.001 4.001 4 C -0.045 4.045 5 C -0.081 4.081 6 N -0.283 5.283 7 C 0.006 3.994 8 C -0.511 4.511 9 H 0.113 0.887 10 C -0.196 4.196 11 N -0.441 5.441 12 Si 0.829 3.171 13 H -0.183 1.183 14 H -0.189 1.189 15 H -0.176 1.176 16 N -0.192 5.192 17 O -0.029 6.029 18 H 0.065 0.935 19 H 0.068 0.932 20 H 0.127 0.873 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.139 0.861 24 H 0.133 0.867 25 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.652 -6.882 0.762 9.602 hybrid contribution 0.077 0.782 0.167 0.803 sum -6.575 -6.100 0.929 9.017 Atomic orbital electron populations 1.22990 0.79000 1.04326 1.00839 1.87772 1.21820 1.26900 1.95623 1.22216 0.91778 0.85104 1.01040 1.19823 0.93397 0.83984 1.07322 1.28779 0.98217 0.98558 0.82549 1.72163 1.21086 1.05317 1.29715 1.22962 0.96072 0.93014 0.87312 1.18888 1.39759 0.97997 0.94441 0.88704 1.27023 0.93734 1.02377 0.96421 1.69973 1.33484 1.29795 1.10846 0.84788 0.79123 0.74827 0.78334 1.18303 1.18882 1.17594 1.75564 1.28284 1.00106 1.15286 1.85114 1.59779 1.22050 1.35988 0.93520 0.93211 0.87350 0.93282 0.92503 0.86051 0.86679 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.69 15 2 O -0.40 -10.16 10.70 -148.98 -1.59 -11.76 15 3 C 0.08 2.17 5.92 71.98 0.43 2.59 15 4 C -0.01 -0.20 6.21 29.85 0.19 -0.01 15 5 C 0.14 6.43 7.73 88.33 0.68 7.11 15 6 N -0.54 -29.11 11.62 -304.63 -3.54 -32.65 15 7 C 0.26 15.67 7.70 134.75 1.04 16.70 15 8 C -0.47 -27.80 9.52 23.56 0.22 -27.58 15 9 H 0.09 5.31 7.85 -2.91 -0.02 5.29 15 10 C 0.02 1.19 5.49 85.28 0.47 1.66 15 11 N -0.81 -47.03 11.98 21.83 0.26 -46.77 15 12 Si 1.01 40.23 29.56 68.60 2.03 42.26 15 13 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 14 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 15 H -0.25 -9.59 7.11 99.48 0.71 -8.88 15 16 N -0.46 -28.16 10.49 -60.21 -0.63 -28.79 15 17 O 0.01 0.54 11.28 73.48 0.83 1.36 15 18 H 0.05 0.80 8.14 -2.39 -0.02 0.78 15 19 H 0.05 0.82 8.14 -2.39 -0.02 0.80 15 20 H 0.11 1.44 8.14 -2.38 -0.02 1.42 15 21 H 0.05 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.06 1.59 8.14 -2.38 -0.02 1.57 15 23 H 0.12 3.15 8.14 -2.39 -0.02 3.13 15 24 H 0.11 3.31 8.14 -2.38 -0.02 3.29 15 25 H 0.29 14.89 8.29 -92.71 -0.77 14.12 15 Total: -1.00 -72.31 233.66 2.82 -69.49 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 1.19 Total: 4.68 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 4.27 Total: 2.16 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -3.91 Total: -108.20 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.77 Total: -10.39 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -72.31 2.82 -69.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073641509.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.641 kcal (2) G-P(sol) polarization free energy of solvation -72.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds