Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.53235 * 2 1 4 4 C 1.53362 * 109.50360 * 120.09203 * 2 1 3 5 5 C 1.51602 * 108.12247 * 172.20500 * 4 2 1 6 6 O 1.20764 * 121.28214 * 131.56121 * 5 4 2 7 7 C 1.51515 * 117.50773 * 311.60491 * 5 4 2 8 8 H 1.09001 * 109.73743 * 168.07500 * 7 5 4 9 9 C 1.52997 * 109.73881 * 288.72637 * 7 5 4 10 10 C 1.50701 * 109.47212 * 294.34314 * 9 7 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.53360 * 108.13162 * 48.40367 * 7 5 4 19 19 O 1.42886 * 109.50834 * 239.89626 * 2 1 3 20 20 H 1.08998 * 109.46834 * 180.10213 * 1 2 3 21 21 H 1.09001 * 109.47283 * 300.10522 * 1 2 3 22 22 H 1.08998 * 109.46545 * 60.10626 * 1 2 3 23 23 H 1.09009 * 109.73834 * 291.85131 * 4 2 1 24 24 H 1.09007 * 109.73467 * 52.49920 * 4 2 1 25 25 H 1.09002 * 109.47153 * 174.34316 * 9 7 5 26 26 H 1.09001 * 109.46832 * 54.34506 * 9 7 5 27 27 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.50580 * 67.66129 * 18 7 5 29 29 H 1.09002 * 109.50172 * 187.77956 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0421 -0.7248 1.2508 5 6 3.5451 -0.8778 1.1250 6 8 4.2839 -0.5794 2.0325 7 6 4.0865 -1.4184 -0.1828 8 1 5.1671 -1.2800 -0.2191 9 6 3.7519 -2.9063 -0.3049 10 6 4.4891 -3.6761 0.7605 11 1 5.1316 -3.1560 1.4555 12 6 4.3424 -5.0442 0.8486 13 7 3.5596 -5.6774 0.0026 14 14 5.2556 -5.9982 2.1697 15 1 4.8443 -5.5064 3.5092 16 1 4.9310 -7.4424 2.0511 17 1 6.7180 -5.8044 1.9988 18 6 3.4262 -0.6431 -1.3295 19 8 2.0072 -0.6755 -1.1652 20 1 -0.3633 -1.0277 0.0018 21 1 -0.3634 0.5155 0.8890 22 1 -0.3632 0.5122 -0.8909 23 1 1.8050 -0.1388 2.1388 24 1 1.5762 -1.7076 1.3233 25 1 4.0537 -3.2671 -1.2882 26 1 2.6786 -3.0488 -0.1792 27 1 3.4568 -6.6400 0.0644 28 1 3.7707 0.3909 -1.3155 29 1 3.6929 -1.1034 -2.2809 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075555192.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -103.185573 kcal Electronic energy + Delta-G solvation = -13026.002337 eV Core-core repulsion = 10720.626723 eV Total energy + Delta-G solvation = -2305.375614 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.72275 -37.32954 -33.90075 -32.54332 -31.52239 -27.91201 -26.70550 -23.47606 -21.93267 -21.61852 -18.21084 -16.47528 -16.16008 -15.76462 -14.93605 -14.57910 -14.52349 -13.92060 -13.29549 -12.65421 -12.31659 -12.15602 -11.98895 -11.68557 -11.39160 -11.22158 -11.02701 -10.60422 -10.58169 -10.16704 -9.71731 -9.33600 -8.96004 -8.70922 -8.35122 -6.03831 -4.07272 2.67041 3.34007 3.37242 3.42062 4.00669 4.44632 4.66186 5.02626 5.16044 5.26018 5.32556 5.54430 5.60087 5.65203 5.76258 5.87263 5.97226 6.21359 6.27184 6.32179 6.49275 6.78011 7.51021 7.57981 7.66969 7.94686 8.17093 8.32660 8.99801 9.58006 11.06590 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.043525 B = 0.010749 C = 0.010213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.150518 B = 2604.238292 C = 2740.986873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.095 3.905 3 H 0.055 0.945 4 C -0.200 4.200 5 C 0.383 3.617 6 O -0.470 6.470 7 C -0.166 4.166 8 H 0.090 0.910 9 C 0.043 3.957 10 C -0.532 4.532 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.072 3.928 19 O -0.371 6.371 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.086 0.914 24 H 0.113 0.887 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.262 0.738 28 H 0.042 0.958 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 9.956 -1.526 11.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.037 3.963 3 H 0.073 0.927 4 C -0.238 4.238 5 C 0.259 3.741 6 O -0.344 6.344 7 C -0.185 4.185 8 H 0.108 0.892 9 C 0.006 3.994 10 C -0.570 4.570 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.004 4.004 19 O -0.290 6.290 20 H 0.088 0.912 21 H 0.087 0.913 22 H 0.082 0.918 23 H 0.105 0.895 24 H 0.131 0.869 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.535 9.846 -1.223 10.909 hybrid contribution 0.698 -0.636 0.920 1.318 sum -3.837 9.210 -0.304 9.982 Atomic orbital electron populations 1.21767 0.92799 1.03407 1.02063 1.22009 0.95362 0.94322 0.84605 0.92682 1.23060 0.96553 1.04474 0.99697 1.24682 0.90387 0.70654 0.88345 1.90308 1.62435 1.39869 1.41783 1.22808 1.01182 1.01659 0.92889 0.89173 1.19009 0.97895 0.84642 0.97881 1.21280 1.27926 0.92384 1.15382 0.92485 1.24973 0.95256 0.97773 0.96003 1.69953 1.37654 1.08934 1.36507 0.86659 0.80408 0.78688 0.82337 1.20199 1.21192 1.20130 1.22738 0.80344 0.98066 0.99281 1.87904 1.21717 1.76572 1.42764 0.91248 0.91265 0.91836 0.89548 0.86936 0.95274 0.95164 0.92831 0.94012 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.57 37.16 0.36 -1.35 15 2 C 0.10 1.40 3.26 -26.54 -0.09 1.32 15 3 H 0.06 0.73 8.13 -51.93 -0.42 0.30 15 4 C -0.20 -3.41 5.42 -27.25 -0.15 -3.56 15 5 C 0.38 7.99 5.55 -28.19 -0.16 7.84 15 6 O -0.47 -11.04 17.91 6.00 0.11 -10.94 15 7 C -0.17 -3.44 2.64 -91.19 -0.24 -3.69 15 8 H 0.09 1.88 8.14 -51.93 -0.42 1.46 15 9 C 0.04 1.08 4.31 -27.88 -0.12 0.96 15 10 C -0.53 -15.18 8.63 -34.44 -0.30 -15.48 15 11 H 0.06 1.66 7.64 -52.49 -0.40 1.26 15 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 13 N -0.89 -26.54 13.29 55.43 0.74 -25.80 15 14 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 15 15 H -0.28 -6.85 7.11 56.52 0.40 -6.44 15 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 18 C 0.07 1.21 6.22 37.34 0.23 1.45 15 19 O -0.37 -6.39 10.05 -35.23 -0.35 -6.75 15 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 15 21 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.09 1.29 8.14 -51.92 -0.42 0.87 15 24 H 0.11 2.05 7.80 -51.93 -0.41 1.65 15 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.03 0.81 7.45 -51.93 -0.39 0.42 15 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 15 28 H 0.04 0.60 8.13 -51.93 -0.42 0.17 15 29 H 0.10 1.60 8.14 -51.93 -0.42 1.18 15 LS Contribution 247.62 15.07 3.73 3.73 Total: -1.00 -31.64 247.62 -5.49 -37.13 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -4.13 Total: -3.66 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -0.56 Total: -10.82 kcal Atomic # 7 Polarization: -26.54 SS G_CDS: 0.74 Total: -25.80 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.25 Total: -17.68 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -31.64 -5.49 -37.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555192.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.054 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds