Wall clock time and date at job start Mon Mar 30 2020 02:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.53235 * 2 1 4 4 C 1.53362 * 109.50360 * 120.09203 * 2 1 3 5 5 C 1.51602 * 108.12247 * 172.20500 * 4 2 1 6 6 O 1.20764 * 121.28214 * 131.56121 * 5 4 2 7 7 C 1.51515 * 117.50773 * 311.60491 * 5 4 2 8 8 H 1.09001 * 109.73743 * 168.07500 * 7 5 4 9 9 C 1.52997 * 109.73881 * 288.72637 * 7 5 4 10 10 C 1.50701 * 109.47212 * 294.34314 * 9 7 5 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 7 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 7 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47294 * 60.00559 * 14 12 10 16 16 H 1.48503 * 109.46954 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47431 * 300.00157 * 14 12 10 18 18 C 1.53360 * 108.13162 * 48.40367 * 7 5 4 19 19 O 1.42886 * 109.50834 * 239.89626 * 2 1 3 20 20 H 1.08998 * 109.46834 * 180.10213 * 1 2 3 21 21 H 1.09001 * 109.47283 * 300.10522 * 1 2 3 22 22 H 1.08998 * 109.46545 * 60.10626 * 1 2 3 23 23 H 1.09009 * 109.73834 * 291.85131 * 4 2 1 24 24 H 1.09007 * 109.73467 * 52.49920 * 4 2 1 25 25 H 1.09002 * 109.47153 * 174.34316 * 9 7 5 26 26 H 1.09001 * 109.46832 * 54.34506 * 9 7 5 27 27 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.50580 * 67.66129 * 18 7 5 29 29 H 1.09002 * 109.50172 * 187.77956 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0421 -0.7248 1.2508 5 6 3.5451 -0.8778 1.1250 6 8 4.2839 -0.5794 2.0325 7 6 4.0865 -1.4184 -0.1828 8 1 5.1671 -1.2800 -0.2191 9 6 3.7519 -2.9063 -0.3049 10 6 4.4891 -3.6761 0.7605 11 1 5.1316 -3.1560 1.4555 12 6 4.3424 -5.0442 0.8486 13 7 3.5596 -5.6774 0.0026 14 14 5.2556 -5.9982 2.1697 15 1 4.8443 -5.5064 3.5092 16 1 4.9310 -7.4424 2.0511 17 1 6.7180 -5.8044 1.9988 18 6 3.4262 -0.6431 -1.3295 19 8 2.0072 -0.6755 -1.1652 20 1 -0.3633 -1.0277 0.0018 21 1 -0.3634 0.5155 0.8890 22 1 -0.3632 0.5122 -0.8909 23 1 1.8050 -0.1388 2.1388 24 1 1.5762 -1.7076 1.3233 25 1 4.0537 -3.2671 -1.2882 26 1 2.6786 -3.0488 -0.1792 27 1 3.4568 -6.6400 0.0644 28 1 3.7707 0.3909 -1.3155 29 1 3.6929 -1.1034 -2.2809 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555192.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:35 Heat of formation + Delta-G solvation = -124.090255 kcal Electronic energy + Delta-G solvation = -13026.908832 eV Core-core repulsion = 10720.626723 eV Total energy + Delta-G solvation = -2306.282110 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.24463 -38.84937 -35.80944 -34.03153 -33.27049 -29.48056 -28.29199 -25.23245 -23.77948 -22.81935 -19.78762 -18.59912 -17.52760 -17.27093 -16.70063 -16.31449 -16.04134 -15.52430 -14.84511 -14.37468 -13.92523 -13.53554 -13.40976 -13.15160 -12.95881 -12.90470 -12.66121 -12.42604 -12.30109 -11.78664 -11.41466 -11.27821 -10.67640 -10.49742 -10.27933 -8.25513 -6.36647 1.00339 1.34862 1.36531 1.45288 2.35859 2.78970 3.07166 3.16060 3.76890 3.81392 4.08079 4.11827 4.26864 4.44249 4.53289 4.67317 4.81105 4.93766 4.96594 5.00715 5.09089 5.35816 5.41124 5.54998 5.76737 6.13997 6.29275 6.51740 6.78121 7.32623 8.84744 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.043525 B = 0.010749 C = 0.010213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.150518 B = 2604.238292 C = 2740.986873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.092 3.908 3 H 0.081 0.919 4 C -0.194 4.194 5 C 0.376 3.624 6 O -0.502 6.502 7 C -0.168 4.168 8 H 0.083 0.917 9 C 0.053 3.947 10 C -0.552 4.552 11 H 0.044 0.956 12 C 0.013 3.987 13 N -0.921 5.921 14 Si 0.953 3.047 15 H -0.275 1.275 16 H -0.274 1.274 17 H -0.269 1.269 18 C 0.079 3.921 19 O -0.386 6.386 20 H 0.054 0.946 21 H 0.095 0.905 22 H 0.078 0.922 23 H 0.110 0.890 24 H 0.096 0.904 25 H 0.011 0.989 26 H 0.011 0.989 27 H 0.266 0.734 28 H 0.076 0.924 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 10.963 -1.287 12.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.034 3.966 3 H 0.099 0.901 4 C -0.232 4.232 5 C 0.255 3.745 6 O -0.378 6.378 7 C -0.187 4.187 8 H 0.101 0.899 9 C 0.016 3.984 10 C -0.590 4.590 11 H 0.063 0.937 12 C -0.187 4.187 13 N -0.560 5.560 14 Si 0.778 3.222 15 H -0.200 1.200 16 H -0.199 1.199 17 H -0.194 1.194 18 C 0.002 3.998 19 O -0.305 6.305 20 H 0.074 0.926 21 H 0.113 0.887 22 H 0.097 0.903 23 H 0.129 0.871 24 H 0.115 0.885 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.049 10.858 -0.998 12.016 hybrid contribution 0.849 -0.944 0.839 1.522 sum -4.200 9.914 -0.159 10.769 Atomic orbital electron populations 1.21793 0.90488 1.03182 1.04127 1.22312 0.97145 0.94762 0.82398 0.90118 1.23080 0.93279 1.04466 1.02407 1.25158 0.92238 0.69533 0.87554 1.90288 1.63668 1.41464 1.42425 1.22734 1.01399 0.99297 0.95310 0.89898 1.18761 0.96105 0.87603 0.95905 1.21584 1.28216 0.93184 1.16053 0.93748 1.25780 0.96022 0.98755 0.98119 1.70047 1.38657 1.09403 1.37904 0.85681 0.79337 0.77727 0.79434 1.20009 1.19912 1.19434 1.22734 0.80148 0.99277 0.97633 1.87903 1.21618 1.77259 1.43759 0.92636 0.88650 0.90342 0.87148 0.88536 0.97101 0.97078 0.92467 0.90613 0.87194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.57 71.98 0.69 -2.20 15 2 C 0.09 2.46 3.26 30.72 0.10 2.56 15 3 H 0.08 1.80 8.13 -2.39 -0.02 1.78 15 4 C -0.19 -6.37 5.42 30.26 0.16 -6.20 15 5 C 0.38 15.56 5.55 29.65 0.16 15.72 15 6 O -0.50 -23.57 17.91 -1.46 -0.03 -23.59 15 7 C -0.17 -6.97 2.64 -11.16 -0.03 -7.00 15 8 H 0.08 3.50 8.14 -2.39 -0.02 3.49 15 9 C 0.05 2.77 4.31 29.85 0.13 2.90 15 10 C -0.55 -32.16 8.63 25.60 0.22 -31.94 15 11 H 0.04 2.64 7.64 -2.91 -0.02 2.62 15 12 C 0.01 0.73 5.46 84.66 0.46 1.19 15 13 N -0.92 -55.36 13.29 21.45 0.28 -55.07 15 14 Si 0.95 45.50 29.54 68.60 2.03 47.52 15 15 H -0.27 -12.96 7.11 99.48 0.71 -12.25 15 16 H -0.27 -12.47 7.11 99.48 0.71 -11.77 15 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 15 18 C 0.08 2.51 6.22 72.10 0.45 2.96 15 19 O -0.39 -12.62 10.05 -148.98 -1.50 -14.11 15 20 H 0.05 1.31 8.14 -2.39 -0.02 1.29 15 21 H 0.09 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.08 1.42 8.14 -2.39 -0.02 1.40 15 23 H 0.11 3.05 8.14 -2.38 -0.02 3.03 15 24 H 0.10 3.51 7.80 -2.38 -0.02 3.49 15 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 15 26 H 0.01 0.60 7.45 -2.39 -0.02 0.58 15 27 H 0.27 15.05 8.31 -92.71 -0.77 14.28 15 28 H 0.08 1.93 8.13 -2.39 -0.02 1.91 15 29 H 0.11 3.30 8.14 -2.39 -0.02 3.28 15 Total: -1.00 -68.15 247.62 4.25 -63.89 By element: Atomic # 1 Polarization: 2.26 SS G_CDS: 1.12 Total: 3.38 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 2.35 Total: -22.02 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.07 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.52 Total: -37.71 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -68.15 4.25 -63.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555192.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.197 kcal (2) G-P(sol) polarization free energy of solvation -68.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds