Wall clock time and date at job start Mon Mar 30 2020 02:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.00366 * 2 1 4 4 C 1.50703 * 109.47174 * 59.83483 * 3 2 1 5 5 H 1.08002 * 119.99603 * 0.02562 * 4 3 2 6 6 C 1.37870 * 119.99820 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00471 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99869 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46826 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47216 * 120.00008 * 8 6 4 11 11 H 1.48499 * 109.46920 * 240.00073 * 8 6 4 12 12 C 1.51445 * 109.98825 * 121.28683 * 2 1 3 13 13 O 1.20756 * 126.34212 * 299.26369 * 12 2 1 14 14 C 1.51846 * 107.31578 * 118.99045 * 12 2 1 15 15 C 1.54889 * 104.42950 * 23.79323 * 14 12 2 16 16 C 1.54278 * 109.98577 * 238.70689 * 2 1 3 17 17 H 1.09001 * 110.56546 * 98.96006 * 16 2 1 18 18 O 1.42901 * 110.69448 * 336.15680 * 16 2 1 19 19 H 1.09012 * 109.47170 * 300.16120 * 1 2 3 20 20 H 1.09000 * 109.47413 * 60.16324 * 1 2 3 21 21 H 1.09003 * 109.47275 * 180.16716 * 1 2 3 22 22 H 1.08995 * 109.47664 * 179.84072 * 3 2 1 23 23 H 1.09003 * 109.46671 * 299.84036 * 3 2 1 24 24 H 0.96998 * 120.00176 * 180.02562 * 7 6 4 25 25 H 1.08999 * 110.43961 * 142.53221 * 14 12 2 26 26 H 1.08996 * 110.44525 * 265.05169 * 14 12 2 27 27 H 1.09007 * 110.83244 * 80.59033 * 15 14 12 28 28 H 1.08999 * 110.83027 * 203.95677 * 15 14 12 29 29 H 0.96700 * 113.99370 * 184.14568 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0534 1.4378 0.0000 4 6 1.5543 2.1540 1.2284 5 1 0.9270 1.6355 1.9383 6 6 1.8986 3.4712 1.4459 7 7 2.6622 4.1028 0.5812 8 14 1.2806 4.3589 2.9690 9 1 0.4452 3.4338 3.7762 10 1 2.4381 4.8162 3.7793 11 1 0.4668 5.5324 2.5619 12 6 2.0476 -0.7391 1.2163 13 8 1.8454 -0.4476 2.3705 14 6 2.8624 -1.9186 0.7155 15 6 3.3051 -1.5045 -0.7099 16 6 2.0572 -0.7531 -1.2389 17 1 2.3375 -0.0503 -2.0236 18 8 1.0808 -1.6784 -1.7209 19 1 -0.3634 0.5164 0.8886 20 1 -0.3634 0.5113 -0.8914 21 1 -0.3634 -1.0277 0.0030 22 1 3.1433 1.4277 0.0029 23 1 1.6971 1.9540 -0.8915 24 1 2.9047 5.0294 0.7344 25 1 3.7320 -2.0785 1.3529 26 1 2.2471 -2.8174 0.6770 27 1 4.1692 -0.8412 -0.6700 28 1 3.5203 -2.3822 -1.3192 29 1 1.3857 -2.2226 -2.4598 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075555290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:35 Heat of formation + Delta-G solvation = -102.456148 kcal Electronic energy + Delta-G solvation = -13213.579831 eV Core-core repulsion = 10908.235847 eV Total energy + Delta-G solvation = -2305.343984 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.69918 -36.91065 -34.20056 -32.88875 -31.30923 -27.01555 -26.11951 -24.25866 -22.17703 -20.46055 -17.69721 -16.90474 -16.09225 -15.28490 -15.17367 -14.31820 -13.97223 -13.37413 -13.13906 -12.33311 -12.22934 -12.07621 -12.01844 -11.31243 -11.18920 -10.87908 -10.76358 -10.71940 -10.24338 -10.05172 -9.64238 -9.50601 -9.02664 -8.41339 -8.18762 -5.96163 -3.95317 2.81037 3.37196 3.44338 3.52933 4.47140 4.62497 4.71775 4.88933 5.28316 5.35674 5.41280 5.71656 5.76175 5.97285 6.02532 6.11135 6.27887 6.31109 6.43428 6.77085 6.96571 7.10106 7.54996 7.59674 7.93825 8.05181 8.36446 8.42973 9.12377 9.68675 11.15682 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.047341 B = 0.011666 C = 0.011094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.309489 B = 2399.659686 C = 2523.171016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.107 4.107 3 C 0.042 3.958 4 C -0.509 4.509 5 H 0.071 0.929 6 C 0.055 3.945 7 N -0.901 5.901 8 Si 0.891 3.109 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.384 3.616 13 O -0.429 6.429 14 C -0.181 4.181 15 C -0.149 4.149 16 C 0.104 3.896 17 H 0.069 0.931 18 O -0.558 6.558 19 H 0.064 0.936 20 H 0.054 0.946 21 H 0.043 0.957 22 H 0.018 0.982 23 H 0.028 0.972 24 H 0.258 0.742 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.353 -10.835 -4.766 11.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C 0.005 3.995 4 C -0.547 4.547 5 H 0.089 0.911 6 C -0.145 4.145 7 N -0.541 5.541 8 Si 0.720 3.280 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.212 1.212 12 C 0.257 3.743 13 O -0.300 6.300 14 C -0.219 4.219 15 C -0.187 4.187 16 C 0.046 3.954 17 H 0.087 0.913 18 O -0.363 6.363 19 H 0.083 0.917 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.036 0.964 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.091 0.909 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.042 -10.230 -3.679 10.871 hybrid contribution 0.296 0.323 0.208 0.485 sum 0.254 -9.907 -3.471 10.500 Atomic orbital electron populations 1.21374 0.92474 1.00153 1.02510 1.21918 0.98348 0.99159 0.91359 1.19101 0.96140 0.85712 0.98509 1.21364 1.30771 0.96084 1.06469 0.91109 1.24978 0.95303 0.97655 0.96574 1.69972 1.37121 1.11185 1.35847 0.86525 0.78676 0.79484 0.83360 1.19531 1.21154 1.21166 1.24641 0.76488 0.83474 0.89661 1.90345 1.51663 1.66347 1.21604 1.22865 1.01277 0.99847 0.97896 1.23084 0.99085 1.00610 0.95922 1.22643 0.87069 0.89822 0.95915 0.91276 1.86576 1.41518 1.54391 1.53795 0.91693 0.92652 0.93761 0.96370 0.95349 0.93196 0.89952 0.88574 0.89963 0.90930 0.78661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.20 7.63 37.15 0.28 -1.92 15 2 C -0.11 -2.21 0.62 -154.62 -0.10 -2.31 15 3 C 0.04 1.08 3.92 -27.88 -0.11 0.97 15 4 C -0.51 -14.56 7.53 -34.44 -0.26 -14.82 15 5 H 0.07 2.07 5.51 -52.49 -0.29 1.78 15 6 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 7 N -0.90 -27.16 13.29 55.43 0.74 -26.43 15 8 Si 0.89 22.65 29.54 -169.99 -5.02 17.63 15 9 H -0.27 -6.88 7.11 56.52 0.40 -6.48 15 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 15 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 12 C 0.38 8.04 6.30 -28.10 -0.18 7.86 15 13 O -0.43 -10.51 16.14 6.00 0.10 -10.41 15 14 C -0.18 -2.81 6.71 -26.32 -0.18 -2.99 15 15 C -0.15 -2.06 6.66 -24.69 -0.16 -2.22 15 16 C 0.10 1.68 3.65 -25.02 -0.09 1.59 15 17 H 0.07 1.11 7.84 -51.93 -0.41 0.70 15 18 O -0.56 -7.91 11.76 -35.23 -0.41 -8.33 15 19 H 0.06 1.45 6.65 -51.92 -0.35 1.10 15 20 H 0.05 1.09 8.14 -51.93 -0.42 0.67 15 21 H 0.04 0.82 7.42 -51.93 -0.39 0.44 15 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 25 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.10 1.33 8.14 -51.93 -0.42 0.90 15 27 H 0.08 1.17 8.14 -51.93 -0.42 0.74 15 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 29 H 0.37 3.32 9.11 45.56 0.42 3.73 15 LS Contribution 242.34 15.07 3.65 3.65 Total: -1.00 -32.61 242.34 -4.94 -37.55 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -3.11 Total: -1.34 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.89 Total: -12.32 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.43 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.32 Total: -18.74 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.61 -4.94 -37.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.905 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds