Wall clock time and date at job start Mon Mar 30 2020 02:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 110.00366 * 2 1 4 4 C 1.50703 * 109.47174 * 59.83483 * 3 2 1 5 5 H 1.08002 * 119.99603 * 0.02562 * 4 3 2 6 6 C 1.37870 * 119.99820 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00471 * 0.02562 * 6 4 3 8 8 Si 1.86808 * 119.99869 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46826 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47216 * 120.00008 * 8 6 4 11 11 H 1.48499 * 109.46920 * 240.00073 * 8 6 4 12 12 C 1.51445 * 109.98825 * 121.28683 * 2 1 3 13 13 O 1.20756 * 126.34212 * 299.26369 * 12 2 1 14 14 C 1.51846 * 107.31578 * 118.99045 * 12 2 1 15 15 C 1.54889 * 104.42950 * 23.79323 * 14 12 2 16 16 C 1.54278 * 109.98577 * 238.70689 * 2 1 3 17 17 H 1.09001 * 110.56546 * 98.96006 * 16 2 1 18 18 O 1.42901 * 110.69448 * 336.15680 * 16 2 1 19 19 H 1.09012 * 109.47170 * 300.16120 * 1 2 3 20 20 H 1.09000 * 109.47413 * 60.16324 * 1 2 3 21 21 H 1.09003 * 109.47275 * 180.16716 * 1 2 3 22 22 H 1.08995 * 109.47664 * 179.84072 * 3 2 1 23 23 H 1.09003 * 109.46671 * 299.84036 * 3 2 1 24 24 H 0.96998 * 120.00176 * 180.02562 * 7 6 4 25 25 H 1.08999 * 110.43961 * 142.53221 * 14 12 2 26 26 H 1.08996 * 110.44525 * 265.05169 * 14 12 2 27 27 H 1.09007 * 110.83244 * 80.59033 * 15 14 12 28 28 H 1.08999 * 110.83027 * 203.95677 * 15 14 12 29 29 H 0.96700 * 113.99370 * 184.14568 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0534 1.4378 0.0000 4 6 1.5543 2.1540 1.2284 5 1 0.9270 1.6355 1.9383 6 6 1.8986 3.4712 1.4459 7 7 2.6622 4.1028 0.5812 8 14 1.2806 4.3589 2.9690 9 1 0.4452 3.4338 3.7762 10 1 2.4381 4.8162 3.7793 11 1 0.4668 5.5324 2.5619 12 6 2.0476 -0.7391 1.2163 13 8 1.8454 -0.4476 2.3705 14 6 2.8624 -1.9186 0.7155 15 6 3.3051 -1.5045 -0.7099 16 6 2.0572 -0.7531 -1.2389 17 1 2.3375 -0.0503 -2.0236 18 8 1.0808 -1.6784 -1.7209 19 1 -0.3634 0.5164 0.8886 20 1 -0.3634 0.5113 -0.8914 21 1 -0.3634 -1.0277 0.0030 22 1 3.1433 1.4277 0.0029 23 1 1.6971 1.9540 -0.8915 24 1 2.9047 5.0294 0.7344 25 1 3.7320 -2.0785 1.3529 26 1 2.2471 -2.8174 0.6770 27 1 4.1692 -0.8412 -0.6700 28 1 3.5203 -2.3822 -1.3192 29 1 1.3857 -2.2226 -2.4598 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555290.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:35 Heat of formation + Delta-G solvation = -126.514777 kcal Electronic energy + Delta-G solvation = -13214.623092 eV Core-core repulsion = 10908.235847 eV Total energy + Delta-G solvation = -2306.387245 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.22699 -38.37475 -35.86532 -34.59248 -33.02219 -29.00945 -27.48393 -25.97782 -24.01875 -21.80511 -19.32701 -18.65630 -17.67950 -16.85868 -16.58641 -16.25495 -15.64980 -14.93292 -14.66089 -14.20740 -13.80995 -13.63753 -13.47430 -13.11685 -12.79750 -12.75683 -12.63779 -12.22802 -12.05506 -11.68866 -11.42231 -11.05031 -10.69892 -10.58364 -9.93318 -8.20778 -6.25647 1.18889 1.33817 1.35140 1.49442 2.39999 3.12697 3.30181 3.39906 3.62131 3.96191 4.19976 4.34608 4.40652 4.53940 4.72222 4.81345 4.89486 5.07113 5.09851 5.21656 5.28601 5.38955 5.45253 5.56091 5.81887 6.24063 6.75337 6.89233 7.10890 7.41417 8.91202 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.047341 B = 0.011666 C = 0.011094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.309489 B = 2399.659686 C = 2523.171016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.120 4.120 3 C 0.051 3.949 4 C -0.520 4.520 5 H 0.057 0.943 6 C 0.002 3.998 7 N -0.931 5.931 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.273 1.273 12 C 0.370 3.630 13 O -0.478 6.478 14 C -0.169 4.169 15 C -0.138 4.138 16 C 0.117 3.883 17 H 0.067 0.933 18 O -0.564 6.564 19 H 0.033 0.967 20 H 0.054 0.946 21 H 0.064 0.936 22 H -0.001 1.001 23 H 0.008 0.992 24 H 0.262 0.738 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 -12.578 -5.465 13.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.121 4.121 3 C 0.014 3.986 4 C -0.558 4.558 5 H 0.076 0.924 6 C -0.195 4.195 7 N -0.572 5.572 8 Si 0.777 3.223 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.198 1.198 12 C 0.246 3.754 13 O -0.352 6.352 14 C -0.207 4.207 15 C -0.176 4.176 16 C 0.058 3.942 17 H 0.085 0.915 18 O -0.373 6.373 19 H 0.052 0.948 20 H 0.073 0.927 21 H 0.083 0.917 22 H 0.018 0.982 23 H 0.026 0.974 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.142 0.858 27 H 0.094 0.906 28 H 0.139 0.861 29 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.285 -11.995 -4.417 12.786 hybrid contribution 0.156 0.838 0.375 0.931 sum 0.441 -11.157 -4.041 11.875 Atomic orbital electron populations 1.21271 0.92663 1.00903 1.00929 1.21921 0.98364 0.97185 0.94593 1.18873 0.94768 0.88781 0.96219 1.21640 1.30363 0.96527 1.07315 0.92438 1.25771 0.95683 0.98606 0.99446 1.70059 1.38148 1.11622 1.37394 0.85603 0.78336 0.78450 0.79950 1.19918 1.20426 1.19834 1.25418 0.76204 0.85000 0.88753 1.90313 1.53469 1.68118 1.23324 1.22862 1.01073 0.97947 0.98777 1.23107 0.97337 1.01988 0.95123 1.22264 0.87870 0.90369 0.93720 0.91465 1.86497 1.41211 1.54333 1.55243 0.94783 0.92662 0.91705 0.98229 0.97380 0.92891 0.88575 0.85819 0.90629 0.86093 0.75452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.10 7.63 71.98 0.55 -3.55 15 2 C -0.12 -4.92 0.62 -52.26 -0.03 -4.95 15 3 C 0.05 2.64 3.92 29.85 0.12 2.76 15 4 C -0.52 -30.69 7.53 25.60 0.19 -30.50 15 5 H 0.06 3.50 5.51 -2.91 -0.02 3.48 15 6 C 0.00 0.13 5.46 84.65 0.46 0.59 15 7 N -0.93 -57.13 13.29 21.44 0.28 -56.84 15 8 Si 0.95 47.30 29.54 68.60 2.03 49.32 15 9 H -0.27 -13.68 7.11 99.48 0.71 -12.98 15 10 H -0.28 -13.47 7.11 99.48 0.71 -12.77 15 11 H -0.27 -12.94 7.11 99.48 0.71 -12.23 15 12 C 0.37 15.25 6.30 29.71 0.19 15.44 15 13 O -0.48 -23.85 16.14 -1.44 -0.02 -23.87 15 14 C -0.17 -4.69 6.71 30.86 0.21 -4.48 15 15 C -0.14 -3.25 6.66 31.91 0.21 -3.04 15 16 C 0.12 3.46 3.65 31.70 0.12 3.58 15 17 H 0.07 2.03 7.84 -2.39 -0.02 2.01 15 18 O -0.56 -13.77 11.76 -148.98 -1.75 -15.52 15 19 H 0.03 1.55 6.65 -2.38 -0.02 1.54 15 20 H 0.05 2.19 8.14 -2.39 -0.02 2.17 15 21 H 0.06 2.34 7.42 -2.39 -0.02 2.32 15 22 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 15 23 H 0.01 0.44 8.14 -2.39 -0.02 0.42 15 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 15 25 H 0.10 2.46 8.14 -2.39 -0.02 2.44 15 26 H 0.12 2.83 8.14 -2.39 -0.02 2.81 15 27 H 0.08 1.92 8.14 -2.38 -0.02 1.90 15 28 H 0.12 1.76 8.14 -2.39 -0.02 1.75 15 29 H 0.40 5.10 9.11 -74.06 -0.67 4.43 15 Total: -1.00 -72.49 242.34 3.02 -69.47 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 0.47 Total: 1.60 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: 2.01 Total: -24.15 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.28 Total: -56.84 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.78 Total: -39.40 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -72.49 3.02 -69.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555290.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.048 kcal (2) G-P(sol) polarization free energy of solvation -72.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds