Wall clock time and date at job start Mon Mar 30 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 110.00540 * 2 1 4 4 C 1.50699 * 109.47311 * 301.29319 * 3 2 1 5 5 H 1.08001 * 119.99675 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00063 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00040 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99923 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47409 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47233 * 119.99427 * 8 6 4 11 11 H 1.48501 * 109.47128 * 239.99445 * 8 6 4 12 12 C 1.51449 * 109.98672 * 238.70450 * 2 1 3 13 13 O 1.20761 * 126.33595 * 60.99062 * 12 2 1 14 14 C 1.51842 * 107.32263 * 241.01191 * 12 2 1 15 15 C 1.54888 * 104.43109 * 336.21122 * 14 12 2 16 16 C 1.54280 * 109.98090 * 121.29540 * 2 1 3 17 17 H 1.09002 * 110.57320 * 23.90320 * 16 2 1 18 18 O 1.42904 * 110.56804 * 261.03681 * 16 2 1 19 19 H 1.08993 * 109.47515 * 298.70766 * 1 2 3 20 20 H 1.09003 * 109.46957 * 58.71286 * 1 2 3 21 21 H 1.09001 * 109.47159 * 178.70363 * 1 2 3 22 22 H 1.09009 * 109.46941 * 61.29162 * 3 2 1 23 23 H 1.08997 * 109.47060 * 181.28659 * 3 2 1 24 24 H 0.96999 * 120.00221 * 180.02562 * 7 6 4 25 25 H 1.08993 * 110.44444 * 217.47309 * 14 12 2 26 26 H 1.08999 * 110.44181 * 94.94576 * 14 12 2 27 27 H 1.09001 * 110.83432 * 279.41755 * 15 14 12 28 28 H 1.09001 * 110.83431 * 155.83395 * 15 14 12 29 29 H 0.96696 * 114.00200 * 184.21774 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0534 1.4376 0.0000 4 6 1.5318 2.1622 -1.2141 5 1 0.8914 1.6484 -1.9158 6 6 1.8730 3.4805 -1.4296 7 7 2.6533 4.1059 -0.5754 8 14 1.2270 4.3784 -2.9349 9 1 0.3768 3.4588 -3.7328 10 1 0.4219 5.5498 -2.5050 11 1 2.3693 4.8401 -3.7639 12 6 2.0476 -0.7393 -1.2162 13 8 1.8489 -0.4454 -2.3705 14 6 2.8623 -1.9188 -0.7154 15 6 3.3051 -1.5047 0.7099 16 6 2.0572 -0.7532 1.2390 17 1 1.3112 -1.4591 1.6042 18 8 2.4246 0.1681 2.2678 19 1 -0.3634 0.4936 0.9013 20 1 -0.3633 0.5337 -0.8783 21 1 -0.3633 -1.0274 -0.0232 22 1 1.7138 1.9479 0.9014 23 1 3.1431 1.4275 -0.0231 24 1 2.8930 5.0335 -0.7269 25 1 3.7319 -2.0788 -1.3527 26 1 2.2469 -2.8176 -0.6768 27 1 4.1691 -0.8414 0.6701 28 1 3.5167 -2.3825 1.3204 29 1 2.8226 -0.2481 3.0446 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555295.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:37 Heat of formation + Delta-G solvation = -126.407544 kcal Electronic energy + Delta-G solvation = -13239.801863 eV Core-core repulsion = 10933.419269 eV Total energy + Delta-G solvation = -2306.382595 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.18795 -38.37365 -35.74151 -34.83853 -33.03075 -29.06531 -27.08644 -26.07040 -24.04159 -21.82895 -19.30890 -18.62206 -17.96305 -16.75141 -16.51185 -15.90478 -15.66734 -15.03170 -14.58613 -14.32811 -14.07533 -13.59453 -13.21411 -13.19026 -12.77802 -12.76235 -12.45767 -12.27411 -12.12383 -11.84763 -11.36862 -10.82365 -10.67639 -10.54595 -9.93381 -8.17134 -6.23632 1.17607 1.33024 1.34073 1.48413 2.40602 3.14922 3.20720 3.46264 3.74441 3.97868 4.22468 4.33418 4.39388 4.52632 4.60420 4.82769 4.91173 5.06440 5.09901 5.23438 5.34395 5.38752 5.54965 5.69206 5.88687 6.29093 6.74816 6.91610 7.19762 7.43051 8.94691 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.041232 B = 0.012864 C = 0.011395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.921746 B = 2176.175172 C = 2456.534519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.129 4.129 3 C 0.072 3.928 4 C -0.523 4.523 5 H 0.059 0.941 6 C -0.004 4.004 7 N -0.933 5.933 8 Si 0.953 3.047 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.370 3.630 13 O -0.475 6.475 14 C -0.169 4.169 15 C -0.141 4.141 16 C 0.113 3.887 17 H 0.100 0.900 18 O -0.575 6.575 19 H 0.057 0.943 20 H 0.040 0.960 21 H 0.077 0.923 22 H 0.004 0.996 23 H -0.019 1.019 24 H 0.260 0.740 25 H 0.096 0.904 26 H 0.139 0.861 27 H 0.059 0.941 28 H 0.123 0.877 29 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 -14.131 5.025 15.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.130 4.130 3 C 0.034 3.966 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.200 4.200 7 N -0.575 5.575 8 Si 0.778 3.222 9 H -0.195 1.195 10 H -0.199 1.199 11 H -0.206 1.206 12 C 0.246 3.754 13 O -0.349 6.349 14 C -0.207 4.207 15 C -0.179 4.179 16 C 0.054 3.946 17 H 0.117 0.883 18 O -0.383 6.383 19 H 0.076 0.924 20 H 0.059 0.941 21 H 0.096 0.904 22 H 0.023 0.977 23 H -0.001 1.001 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.157 0.843 27 H 0.078 0.922 28 H 0.141 0.859 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -0.829 -13.387 4.017 14.001 hybrid contribution 0.165 0.807 -0.384 0.909 sum -0.664 -12.580 3.633 13.111 Atomic orbital electron populations 1.21604 0.92305 1.01627 1.01906 1.21975 0.98049 0.98212 0.94803 1.18468 0.93544 0.89310 0.95238 1.21813 1.29390 0.96543 1.08413 0.92259 1.25871 0.95838 0.98849 0.99489 1.70118 1.37880 1.11555 1.37943 0.85573 0.78334 0.78494 0.79752 1.19514 1.19853 1.20573 1.25322 0.76347 0.85072 0.88614 1.90324 1.53437 1.67962 1.23213 1.22905 1.01450 0.98144 0.98161 1.23138 0.97733 1.01595 0.95408 1.22615 0.96138 0.89305 0.86524 0.88284 1.86716 1.83751 1.37336 1.30490 0.92400 0.94135 0.90441 0.97721 1.00104 0.93097 0.88588 0.84318 0.92175 0.85914 0.76029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.45 8.15 71.98 0.59 -3.86 15 2 C -0.13 -5.29 0.63 -52.26 -0.03 -5.32 15 3 C 0.07 3.95 3.35 29.85 0.10 4.05 15 4 C -0.52 -31.81 7.51 25.60 0.19 -31.61 15 5 H 0.06 3.64 5.53 -2.91 -0.02 3.62 15 6 C 0.00 -0.23 5.46 84.65 0.46 0.23 15 7 N -0.93 -60.05 13.29 21.45 0.28 -59.76 15 8 Si 0.95 48.35 29.54 68.60 2.03 50.38 15 9 H -0.27 -13.54 7.11 99.48 0.71 -12.83 15 10 H -0.27 -13.20 7.11 99.48 0.71 -12.49 15 11 H -0.28 -13.84 7.11 99.48 0.71 -13.13 15 12 C 0.37 14.77 6.31 29.71 0.19 14.96 15 13 O -0.48 -23.17 16.23 -1.45 -0.02 -23.19 15 14 C -0.17 -4.34 6.72 30.86 0.21 -4.13 15 15 C -0.14 -3.33 6.66 31.92 0.21 -3.12 15 16 C 0.11 3.30 3.65 31.71 0.12 3.42 15 17 H 0.10 2.15 7.85 -2.39 -0.02 2.13 15 18 O -0.58 -18.91 11.77 -148.98 -1.75 -20.66 15 19 H 0.06 2.16 8.14 -2.39 -0.02 2.14 15 20 H 0.04 1.77 6.55 -2.39 -0.02 1.76 15 21 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 22 H 0.00 0.27 7.48 -2.38 -0.02 0.26 15 23 H -0.02 -1.19 8.14 -2.39 -0.02 -1.20 15 24 H 0.26 15.71 8.31 -92.71 -0.77 14.93 15 25 H 0.10 2.35 8.14 -2.39 -0.02 2.33 15 26 H 0.14 2.45 8.14 -2.39 -0.02 2.43 15 27 H 0.06 1.72 8.14 -2.39 -0.02 1.70 15 28 H 0.12 1.71 8.14 -2.39 -0.02 1.69 15 29 H 0.39 7.83 9.11 -74.06 -0.67 7.16 15 Total: -1.00 -78.96 242.39 3.04 -75.92 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: 0.47 Total: 2.70 kcal Atomic # 6 Polarization: -27.42 SS G_CDS: 2.03 Total: -25.39 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: 0.28 Total: -59.76 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -1.78 Total: -43.85 kcal Atomic # 14 Polarization: 48.35 SS G_CDS: 2.03 Total: 50.38 kcal Total: -78.96 3.04 -75.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555295.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.488 kcal (2) G-P(sol) polarization free energy of solvation -78.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds