Wall clock time and date at job start Mon Mar 30 2020 02:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53002 * 109.97004 * 2 1 4 4 C 1.50706 * 109.46925 * 300.70107 * 3 2 1 5 5 H 1.07999 * 120.00196 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99394 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00338 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99426 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.47555 * 90.00165 * 8 6 4 10 10 H 1.48503 * 109.46814 * 210.00053 * 8 6 4 11 11 H 1.48496 * 109.47318 * 329.99545 * 8 6 4 12 12 C 1.51449 * 109.98030 * 238.72960 * 2 1 3 13 13 O 1.20757 * 126.34191 * 60.23811 * 12 2 1 14 14 C 1.51839 * 107.31512 * 240.25337 * 12 2 1 15 15 C 1.54890 * 104.43542 * 23.79321 * 14 12 2 16 16 C 1.54273 * 109.98271 * 121.27039 * 2 1 3 17 17 H 1.08999 * 110.56939 * 214.82494 * 16 2 1 18 18 O 1.42894 * 110.57453 * 337.69758 * 16 2 1 19 19 H 1.08997 * 109.47080 * 59.29979 * 1 2 3 20 20 H 1.08998 * 109.47023 * 179.29741 * 1 2 3 21 21 H 1.08999 * 109.46687 * 299.30264 * 1 2 3 22 22 H 1.09000 * 109.46497 * 180.70370 * 3 2 1 23 23 H 1.09000 * 109.47312 * 60.70150 * 3 2 1 24 24 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 25 25 H 1.09004 * 110.44173 * 142.53160 * 14 12 2 26 26 H 1.09005 * 110.44101 * 265.05759 * 14 12 2 27 27 H 1.08995 * 110.83161 * 80.58544 * 15 14 12 28 28 H 1.08996 * 110.83292 * 204.16638 * 15 14 12 29 29 H 0.96698 * 114.00281 * 179.97438 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0526 1.4380 0.0000 4 6 1.5424 2.1579 -1.2217 5 1 0.9084 1.6415 -1.9274 6 6 1.8849 3.4757 -1.4386 7 7 2.6565 4.1046 -0.5790 8 14 1.2519 4.3682 -2.9525 9 1 -0.0467 5.0164 -2.6383 10 1 2.2346 5.4026 -3.3644 11 1 1.0646 3.3953 -4.0586 12 6 2.0476 -0.7388 -1.2166 13 8 1.8383 -0.4518 -2.3707 14 6 2.8779 -1.9074 -0.7162 15 6 2.3381 -2.1824 0.7093 16 6 2.0573 -0.7526 1.2392 17 1 2.9755 -0.2927 1.6047 18 8 1.0657 -0.7832 2.2677 19 1 -0.3633 0.5247 -0.8836 20 1 -0.3633 -1.0276 -0.0126 21 1 -0.3633 0.5030 0.8962 22 1 3.1425 1.4284 -0.0126 23 1 1.7041 1.9513 0.8962 24 1 2.8971 5.0318 -0.7315 25 1 2.7311 -2.7794 -1.3537 26 1 3.9330 -1.6360 -0.6779 27 1 1.4196 -2.7679 0.6696 28 1 3.0910 -2.6812 1.3194 29 1 1.3452 -1.2451 3.0699 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075555301.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:42 Heat of formation + Delta-G solvation = -126.907737 kcal Electronic energy + Delta-G solvation = -13185.921893 eV Core-core repulsion = 10879.517608 eV Total energy + Delta-G solvation = -2306.404285 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.20730 -38.38596 -35.81833 -34.81967 -33.01366 -28.94847 -27.15583 -26.31345 -23.89959 -21.83540 -19.31815 -18.42427 -18.24600 -16.99754 -16.38278 -15.90747 -15.59318 -14.99473 -14.57293 -14.35467 -14.04294 -13.77017 -13.41734 -12.95744 -12.82419 -12.75600 -12.45870 -12.26233 -12.18723 -11.72896 -11.47476 -11.03162 -10.60692 -10.57445 -9.95911 -8.20456 -6.26192 1.16232 1.34157 1.35268 1.48068 2.39916 3.12404 3.20359 3.45133 3.70361 3.92495 4.22139 4.33454 4.37499 4.52841 4.65688 4.82976 4.92076 5.05413 5.11409 5.23389 5.29856 5.39655 5.44741 5.59349 5.81691 6.23968 6.72847 6.88482 7.11094 7.40869 8.91337 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.045259 B = 0.011951 C = 0.010833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.519475 B = 2342.250845 C = 2584.048198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.123 4.123 3 C 0.050 3.950 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.000 4.000 7 N -0.933 5.933 8 Si 0.952 3.048 9 H -0.270 1.270 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.372 3.628 13 O -0.474 6.474 14 C -0.173 4.173 15 C -0.131 4.131 16 C 0.113 3.887 17 H 0.067 0.933 18 O -0.568 6.568 19 H 0.033 0.967 20 H 0.061 0.939 21 H 0.056 0.944 22 H -0.005 1.005 23 H 0.002 0.998 24 H 0.262 0.738 25 H 0.110 0.890 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -13.437 4.994 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C 0.013 3.987 4 C -0.560 4.560 5 H 0.077 0.923 6 C -0.197 4.197 7 N -0.574 5.574 8 Si 0.778 3.222 9 H -0.196 1.196 10 H -0.203 1.203 11 H -0.200 1.200 12 C 0.248 3.752 13 O -0.348 6.348 14 C -0.211 4.211 15 C -0.168 4.168 16 C 0.054 3.946 17 H 0.085 0.915 18 O -0.376 6.376 19 H 0.053 0.947 20 H 0.080 0.920 21 H 0.075 0.925 22 H 0.014 0.986 23 H 0.020 0.980 24 H 0.071 0.929 25 H 0.129 0.871 26 H 0.133 0.867 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.058 -12.792 3.972 13.395 hybrid contribution 0.151 0.844 -0.336 0.921 sum 0.093 -11.948 3.635 12.489 Atomic orbital electron populations 1.21228 0.92525 1.00682 1.00996 1.21892 0.98481 0.97319 0.94718 1.18897 0.94340 0.89533 0.95943 1.21646 1.29991 0.96575 1.07783 0.92321 1.25821 0.95680 0.98681 0.99509 1.70067 1.37940 1.11627 1.37745 0.85632 0.78487 0.78178 0.79936 1.19552 1.20340 1.20010 1.25265 0.76836 0.84554 0.88572 1.90324 1.53603 1.67695 1.23157 1.22921 1.01380 0.97751 0.99022 1.23107 1.03114 0.96211 0.94385 1.22445 0.90197 0.95183 0.86758 0.91490 1.86537 1.42152 1.80827 1.28082 0.94746 0.92039 0.92522 0.98644 0.97974 0.92913 0.87145 0.86693 0.89316 0.86740 0.75626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.98 7.55 71.99 0.54 -3.44 15 2 C -0.12 -5.08 0.63 -52.25 -0.03 -5.11 15 3 C 0.05 2.67 3.93 29.85 0.12 2.79 15 4 C -0.52 -31.14 7.53 25.60 0.19 -30.95 15 5 H 0.06 3.57 5.51 -2.91 -0.02 3.56 15 6 C 0.00 0.01 5.46 84.66 0.46 0.47 15 7 N -0.93 -58.18 13.29 21.45 0.28 -57.90 15 8 Si 0.95 47.60 29.54 68.60 2.03 49.62 15 9 H -0.27 -12.93 7.11 99.48 0.71 -12.22 15 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 15 11 H -0.28 -13.78 7.11 99.48 0.71 -13.08 15 12 C 0.37 14.93 6.29 29.70 0.19 15.11 15 13 O -0.47 -23.15 16.20 -1.44 -0.02 -23.17 15 14 C -0.17 -4.50 6.72 30.86 0.21 -4.29 15 15 C -0.13 -2.72 6.67 31.94 0.21 -2.50 15 16 C 0.11 3.38 3.65 31.73 0.12 3.50 15 17 H 0.07 2.02 7.85 -2.39 -0.02 2.00 15 18 O -0.57 -15.65 11.78 -148.98 -1.75 -17.41 15 19 H 0.03 1.58 6.60 -2.39 -0.02 1.56 15 20 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 21 H 0.06 2.36 7.51 -2.39 -0.02 2.34 15 22 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 15 23 H 0.00 0.11 8.14 -2.39 -0.02 0.09 15 24 H 0.26 15.39 8.31 -92.71 -0.77 14.62 15 25 H 0.11 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.12 2.72 8.14 -2.38 -0.02 2.70 15 27 H 0.09 1.72 8.14 -2.39 -0.02 1.70 15 28 H 0.11 1.53 8.14 -2.39 -0.02 1.51 15 29 H 0.39 6.22 9.12 -74.06 -0.68 5.54 15 Total: -1.00 -74.44 242.44 3.01 -71.43 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: 0.47 Total: 1.85 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 2.01 Total: -24.42 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.28 Total: -57.90 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -1.78 Total: -40.58 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.62 kcal Total: -74.44 3.01 -71.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075555301.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.478 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds