Wall clock time and date at job start Mon Mar 30 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47396 * 239.99964 * 3 2 1 5 5 H 1.48496 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46892 * 120.00053 * 3 2 1 7 7 C 1.37877 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00509 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47507 * 179.97438 * 9 7 2 11 11 O 1.20766 * 119.99913 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00453 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.57143 * 35.15170 * 12 10 9 14 14 C 1.53177 * 109.53626 * 155.30530 * 12 10 9 15 15 C 1.53173 * 109.04588 * 176.87704 * 14 12 10 16 16 C 1.53095 * 109.16329 * 303.02563 * 15 14 12 17 17 O 1.42901 * 109.41489 * 57.60980 * 16 15 14 18 18 C 1.42905 * 114.09770 * 298.84274 * 17 16 15 19 19 H 0.97000 * 119.99901 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47535 * 59.98905 * 9 7 2 21 21 H 1.09001 * 109.46671 * 299.99423 * 9 7 2 22 22 H 1.08995 * 109.53065 * 57.00471 * 14 12 10 23 23 H 1.09003 * 109.61545 * 296.79713 * 14 12 10 24 24 H 1.09001 * 109.52011 * 183.12252 * 15 14 12 25 25 H 1.09003 * 109.52380 * 62.93128 * 15 14 12 26 26 H 1.09002 * 109.47669 * 297.62672 * 16 15 14 27 27 H 1.08997 * 109.48836 * 177.60373 * 16 15 14 28 28 H 1.09002 * 109.48053 * 181.14179 * 18 17 16 29 29 H 1.08999 * 109.48097 * 301.16746 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 8 3.4175 -3.4241 0.0001 12 6 1.7279 -5.0655 0.0011 13 1 0.8142 -5.1300 -0.5899 14 6 2.7935 -5.9858 -0.6021 15 6 2.3041 -7.4352 -0.5247 16 6 1.9935 -7.7835 0.9334 17 8 1.0184 -6.8712 1.4424 18 6 1.4393 -5.5055 1.4388 19 1 -0.4850 0.8401 -0.0004 20 1 0.6245 -2.5571 -0.8895 21 1 0.6240 -2.5567 0.8904 22 1 3.7225 -5.8840 -0.0413 23 1 2.9648 -5.7138 -1.6437 24 1 3.0797 -8.1021 -0.9012 25 1 1.4021 -7.5477 -1.1262 26 1 2.9049 -7.7099 1.5268 27 1 1.6044 -8.8001 0.9895 28 1 0.6507 -4.8810 1.8587 29 1 2.3433 -5.4021 2.0389 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082580573.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:29 Heat of formation + Delta-G solvation = -105.510784 kcal Electronic energy + Delta-G solvation = -12664.970096 eV Core-core repulsion = 10359.493653 eV Total energy + Delta-G solvation = -2305.476443 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.64874 -37.78938 -33.36567 -32.96830 -31.34506 -28.90149 -25.07098 -24.51732 -22.97677 -20.29432 -18.59116 -16.51148 -16.04340 -15.90612 -15.14149 -14.72545 -14.58245 -13.99920 -13.39106 -12.96941 -12.84304 -12.48350 -12.00128 -11.44870 -11.15144 -10.96976 -10.93955 -10.74187 -10.61484 -10.21698 -10.00815 -9.43489 -9.32268 -8.45091 -8.33057 -6.07148 -4.08526 2.94326 3.34672 3.37532 3.42378 3.95367 4.42837 4.80123 4.91147 4.96159 5.15742 5.23483 5.30777 5.38507 5.53620 5.73121 5.82215 5.88731 6.00609 6.06503 6.27634 6.45075 6.65054 7.21271 7.25405 7.33100 7.91032 8.19641 8.64534 9.00471 9.56692 11.04677 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.073330 B = 0.007836 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.743359 B = 3572.480522 C = 3751.741763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.026 4.026 10 C 0.362 3.638 11 O -0.462 6.462 12 C -0.179 4.179 13 H 0.100 0.900 14 C -0.111 4.111 15 C -0.155 4.155 16 C 0.058 3.942 17 O -0.381 6.381 18 C 0.078 3.922 19 H 0.263 0.737 20 H 0.053 0.947 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -12.765 0.566 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.063 4.063 10 C 0.238 3.762 11 O -0.336 6.336 12 C -0.199 4.199 13 H 0.118 0.882 14 C -0.148 4.148 15 C -0.192 4.192 16 C -0.018 4.018 17 O -0.299 6.299 18 C 0.001 3.999 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.226 -12.583 0.633 12.794 hybrid contribution 0.505 0.985 -0.228 1.131 sum 2.731 -11.598 0.405 11.922 Atomic orbital electron populations 1.69950 1.06038 1.27041 1.50742 1.25005 0.94888 0.99450 0.95068 0.86527 0.79453 0.82468 0.78830 1.20156 1.21287 1.20120 1.21145 0.94056 0.89698 1.50822 0.91094 1.19623 0.95084 0.91902 0.99680 1.25104 0.90890 0.90843 0.69354 1.90225 1.19965 1.87363 1.36017 1.22534 1.01245 0.96773 0.99314 0.88213 1.21474 0.98331 0.93289 1.01716 1.22198 1.01919 0.97317 0.97800 1.22574 0.92485 0.93355 0.93435 1.87931 1.41572 1.16474 1.83946 1.22429 1.01055 0.82439 0.94001 0.92794 0.92936 0.92860 0.91075 0.91410 0.91044 0.91056 0.93325 0.89152 0.87757 0.92891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.29 55.43 0.74 -25.65 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 7 C -0.52 -14.93 8.92 -34.44 -0.31 -15.23 15 8 H 0.07 2.10 6.76 -52.49 -0.35 1.74 15 9 C -0.03 -0.66 5.40 -29.04 -0.16 -0.82 15 10 C 0.36 7.87 6.27 -29.04 -0.18 7.68 15 11 O -0.46 -11.25 15.14 5.99 0.09 -11.16 15 12 C -0.18 -3.02 2.66 -91.63 -0.24 -3.26 15 13 H 0.10 1.61 8.14 -51.93 -0.42 1.19 15 14 C -0.11 -1.65 4.90 -26.55 -0.13 -1.78 15 15 C -0.15 -1.82 6.14 -26.59 -0.16 -1.99 15 16 C 0.06 0.69 6.84 37.21 0.25 0.95 15 17 O -0.38 -5.66 10.77 -35.23 -0.38 -6.04 15 18 C 0.08 1.21 6.11 37.20 0.23 1.44 15 19 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 20 H 0.05 1.35 8.14 -51.93 -0.42 0.93 15 21 H 0.05 1.35 8.14 -51.93 -0.42 0.92 15 22 H 0.07 1.12 7.77 -51.93 -0.40 0.71 15 23 H 0.07 1.02 8.14 -51.93 -0.42 0.59 15 24 H 0.07 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 15 27 H 0.09 0.87 8.14 -51.93 -0.42 0.45 15 28 H 0.10 1.60 8.14 -51.93 -0.42 1.18 15 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 LS Contribution 247.00 15.07 3.72 3.72 Total: -1.00 -30.98 247.00 -5.77 -36.75 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -4.12 Total: -3.15 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -0.80 Total: -11.47 kcal Atomic # 7 Polarization: -26.38 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.29 Total: -17.20 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.98 -5.77 -36.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082580573.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.764 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds