Wall clock time and date at job start Mon Mar 30 2020 02:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86791 * 120.00115 * 2 1 4 4 H 1.48499 * 109.47396 * 239.99964 * 3 2 1 5 5 H 1.48496 * 109.47155 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46892 * 120.00053 * 3 2 1 7 7 C 1.37877 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00509 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47507 * 179.97438 * 9 7 2 11 11 O 1.20766 * 119.99913 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00453 * 179.97438 * 10 9 7 13 13 H 1.09004 * 109.57143 * 35.15170 * 12 10 9 14 14 C 1.53177 * 109.53626 * 155.30530 * 12 10 9 15 15 C 1.53173 * 109.04588 * 176.87704 * 14 12 10 16 16 C 1.53095 * 109.16329 * 303.02563 * 15 14 12 17 17 O 1.42901 * 109.41489 * 57.60980 * 16 15 14 18 18 C 1.42905 * 114.09770 * 298.84274 * 17 16 15 19 19 H 0.97000 * 119.99901 * 0.02562 * 1 2 3 20 20 H 1.08999 * 109.47535 * 59.98905 * 9 7 2 21 21 H 1.09001 * 109.46671 * 299.99423 * 9 7 2 22 22 H 1.08995 * 109.53065 * 57.00471 * 14 12 10 23 23 H 1.09003 * 109.61545 * 296.79713 * 14 12 10 24 24 H 1.09001 * 109.52011 * 183.12252 * 15 14 12 25 25 H 1.09003 * 109.52380 * 62.93128 * 15 14 12 26 26 H 1.09002 * 109.47669 * 297.62672 * 16 15 14 27 27 H 1.08997 * 109.48836 * 177.60373 * 16 15 14 28 28 H 1.09002 * 109.48053 * 181.14179 * 18 17 16 29 29 H 1.08999 * 109.48097 * 301.16746 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 8 3.4175 -3.4241 0.0001 12 6 1.7279 -5.0655 0.0011 13 1 0.8142 -5.1300 -0.5899 14 6 2.7935 -5.9858 -0.6021 15 6 2.3041 -7.4352 -0.5247 16 6 1.9935 -7.7835 0.9334 17 8 1.0184 -6.8712 1.4424 18 6 1.4393 -5.5055 1.4388 19 1 -0.4850 0.8401 -0.0004 20 1 0.6245 -2.5571 -0.8895 21 1 0.6240 -2.5567 0.8904 22 1 3.7225 -5.8840 -0.0413 23 1 2.9648 -5.7138 -1.6437 24 1 3.0797 -8.1021 -0.9012 25 1 1.4021 -7.5477 -1.1262 26 1 2.9049 -7.7099 1.5268 27 1 1.6044 -8.8001 0.9895 28 1 0.6507 -4.8810 1.8587 29 1 2.3433 -5.4021 2.0389 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082580573.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:29 Heat of formation + Delta-G solvation = -125.502303 kcal Electronic energy + Delta-G solvation = -12665.836994 eV Core-core repulsion = 10359.493653 eV Total energy + Delta-G solvation = -2306.343341 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.07365 -39.29853 -35.14365 -34.58140 -32.63275 -30.85049 -26.60072 -25.88415 -24.55947 -21.54590 -20.21381 -18.56956 -17.29348 -17.23005 -16.92610 -16.24110 -15.97288 -15.57795 -15.03345 -14.48435 -14.24620 -13.95180 -13.53667 -13.22318 -12.86985 -12.62169 -12.49244 -12.12892 -12.11635 -11.87115 -11.49516 -11.31518 -10.64771 -10.59353 -10.08439 -8.26465 -6.35777 1.18111 1.38307 1.40598 1.49365 2.38068 2.82856 3.07878 3.37328 3.70171 3.84899 3.98498 4.12431 4.21878 4.48480 4.64371 4.71695 4.74718 4.86812 4.93894 5.04068 5.10516 5.15831 5.27557 5.32969 5.68056 6.07860 6.17196 6.74924 6.85716 7.33531 8.84929 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.073330 B = 0.007836 C = 0.007461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.743359 B = 3572.480522 C = 3751.741763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.055 0.945 9 C -0.030 4.030 10 C 0.370 3.630 11 O -0.491 6.491 12 C -0.168 4.168 13 H 0.109 0.891 14 C -0.111 4.111 15 C -0.146 4.146 16 C 0.049 3.951 17 O -0.389 6.389 18 C 0.083 3.917 19 H 0.267 0.733 20 H 0.043 0.957 21 H 0.048 0.952 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.055 0.945 27 H 0.120 0.880 28 H 0.102 0.898 29 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.168 -13.790 0.511 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.067 4.067 10 C 0.248 3.752 11 O -0.367 6.367 12 C -0.187 4.187 13 H 0.127 0.873 14 C -0.148 4.148 15 C -0.183 4.183 16 C -0.027 4.027 17 O -0.308 6.308 18 C 0.006 3.994 19 H 0.076 0.924 20 H 0.061 0.939 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.462 -13.627 0.579 13.860 hybrid contribution 0.415 1.271 -0.219 1.355 sum 2.876 -12.356 0.360 12.692 Atomic orbital electron populations 1.70032 1.07233 1.28164 1.50941 1.25810 0.95817 1.02839 0.94407 0.85543 0.78405 0.78417 0.78952 1.19724 1.19981 1.19611 1.21420 0.93689 0.91784 1.51612 0.92639 1.19578 0.95559 0.92602 0.98953 1.25116 0.89619 0.92460 0.68034 1.90209 1.20871 1.88146 1.37448 1.22410 1.02072 0.93399 1.00850 0.87289 1.21499 0.97206 0.95094 1.01036 1.22173 1.02917 0.95183 0.98063 1.22885 0.92507 0.93975 0.93323 1.87931 1.42706 1.15926 1.84216 1.22305 1.00972 0.83408 0.92754 0.92380 0.93875 0.93406 0.92055 0.91761 0.88368 0.90501 0.92699 0.86235 0.87984 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.54 13.29 21.45 0.28 -54.25 15 2 C 0.01 0.58 5.46 84.65 0.46 1.04 15 3 Si 0.96 45.16 29.54 68.60 2.03 47.18 15 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 15 5 H -0.27 -12.27 7.11 99.48 0.71 -11.56 15 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 15 7 C -0.55 -32.07 8.92 25.60 0.23 -31.85 15 8 H 0.06 3.36 6.76 -2.91 -0.02 3.34 15 9 C -0.03 -1.55 5.40 29.10 0.16 -1.39 15 10 C 0.37 16.25 6.27 29.10 0.18 16.43 15 11 O -0.49 -24.28 15.14 -1.47 -0.02 -24.30 15 12 C -0.17 -5.53 2.66 -11.45 -0.03 -5.56 15 13 H 0.11 3.39 8.14 -2.38 -0.02 3.37 15 14 C -0.11 -3.13 4.90 30.71 0.15 -2.98 15 15 C -0.15 -2.98 6.14 30.68 0.19 -2.79 15 16 C 0.05 1.01 6.84 72.01 0.49 1.50 15 17 O -0.39 -10.69 10.77 -148.98 -1.60 -12.30 15 18 C 0.08 2.50 6.11 72.01 0.44 2.94 15 19 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 20 H 0.04 2.28 8.14 -2.39 -0.02 2.26 15 21 H 0.05 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.06 1.85 7.77 -2.39 -0.02 1.84 15 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.10 1.53 8.14 -2.39 -0.02 1.52 15 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 15 27 H 0.12 1.80 8.14 -2.39 -0.02 1.78 15 28 H 0.10 3.09 8.14 -2.39 -0.02 3.07 15 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 15 Total: -1.00 -65.87 247.00 4.07 -61.80 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.12 Total: 4.51 kcal Atomic # 6 Polarization: -24.91 SS G_CDS: 2.27 Total: -22.64 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.28 Total: -54.25 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -1.63 Total: -36.60 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.18 kcal Total: -65.87 4.07 -61.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082580573.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.704 kcal (2) G-P(sol) polarization free energy of solvation -65.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds