Wall clock time and date at job start Mon Mar 30 2020 02:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30513 * 1 3 3 Si 1.86804 * 119.99620 * 2 1 4 4 H 1.48499 * 109.47027 * 0.02562 * 3 2 1 5 5 H 1.48494 * 109.47417 * 240.00392 * 3 2 1 6 6 H 1.48503 * 109.47251 * 120.00210 * 3 2 1 7 7 C 1.40459 * 120.00762 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99242 * 4.88391 * 7 2 1 9 9 C 1.41023 * 120.00215 * 184.87521 * 7 2 1 10 10 O 1.21429 * 120.00121 * 6.41948 * 9 7 2 11 11 C 1.50700 * 120.00058 * 186.41650 * 9 7 2 12 12 C 1.52997 * 109.47239 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47142 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.27043 * 55.63735 * 13 12 11 15 15 C 1.54944 * 110.30809 * 177.83110 * 13 12 11 16 16 C 1.55304 * 100.93913 * 155.36355 * 15 13 12 17 17 C 1.54381 * 102.25202 * 325.86569 * 16 15 13 18 18 O 1.43233 * 107.58950 * 21.36057 * 17 16 15 19 19 H 0.97009 * 119.99371 * 174.91527 * 1 2 3 20 20 H 1.09005 * 109.46815 * 300.00230 * 11 9 7 21 21 H 1.08999 * 109.47120 * 60.00382 * 11 9 7 22 22 H 1.08996 * 109.46853 * 299.99844 * 12 11 9 23 23 H 1.08999 * 109.47241 * 59.99858 * 12 11 9 24 24 H 1.09006 * 111.12313 * 273.27854 * 15 13 12 25 25 H 1.08993 * 111.12905 * 37.44248 * 15 13 12 26 26 H 1.09002 * 110.84594 * 207.67501 * 16 15 13 27 27 H 1.08998 * 111.02617 * 84.13742 * 16 15 13 28 28 H 1.09000 * 109.83155 * 261.84326 * 17 16 15 29 29 H 1.09004 * 109.90489 * 140.91679 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2390 1.6178 0.0000 4 1 1.2740 2.7465 0.0006 5 1 3.0927 1.6967 -1.2125 6 1 3.0929 1.6966 1.2125 7 6 2.0076 -1.2163 -0.0005 8 1 1.4705 -2.1499 -0.0806 9 6 3.4140 -1.2184 0.1032 10 8 4.0091 -0.1804 0.3100 11 6 4.1783 -2.5090 -0.0423 12 6 5.6757 -2.2352 0.1121 13 6 6.4516 -3.5456 -0.0351 14 1 6.2095 -4.0233 -0.9845 15 6 7.9753 -3.2823 0.0638 16 6 8.4843 -4.6712 0.5370 17 6 7.3262 -5.1558 1.4355 18 8 6.1517 -4.4281 1.0579 19 1 -0.4850 -0.8369 -0.0745 20 1 3.8564 -3.2107 0.7272 21 1 3.9864 -2.9360 -1.0267 22 1 5.9978 -1.5334 -0.6571 23 1 5.8674 -1.8084 1.0966 24 1 8.3929 -3.0214 -0.9087 25 1 8.1937 -2.5113 0.8026 26 1 9.4054 -4.5717 1.1114 27 1 8.6272 -5.3442 -0.3084 28 1 7.5625 -4.9597 2.4813 29 1 7.1633 -6.2234 1.2874 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083523854.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:34 Heat of formation + Delta-G solvation = -146.022775 kcal Electronic energy + Delta-G solvation = -12523.361532 eV Core-core repulsion = 10216.128357 eV Total energy + Delta-G solvation = -2307.233175 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.48835 -39.45711 -35.32425 -34.29166 -32.98557 -30.22871 -28.40160 -25.00353 -22.54931 -21.99730 -21.00488 -19.46845 -17.84606 -17.05945 -16.45801 -16.08404 -15.96924 -15.48726 -14.98270 -14.44801 -13.96116 -13.88482 -13.64814 -12.71643 -12.58502 -12.55486 -12.36468 -12.19138 -11.78057 -11.68555 -11.65499 -11.37690 -11.26991 -10.42746 -9.91995 -9.10254 -7.42624 1.25403 1.52159 1.93217 2.00861 2.39235 2.92515 3.09334 3.60011 3.72451 4.02293 4.18033 4.20588 4.32253 4.46625 4.53346 4.78471 4.83719 4.87276 4.89887 4.93680 5.05434 5.20417 5.29693 5.35847 5.37711 5.65943 6.17330 6.22068 6.46049 7.75750 7.89352 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.074821 B = 0.007775 C = 0.007258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.134512 B = 3600.459515 C = 3856.877076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.022 3.978 3 Si 1.167 2.833 4 H -0.307 1.307 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.608 4.608 8 H 0.063 0.937 9 C 0.346 3.654 10 O -0.606 6.606 11 C -0.137 4.137 12 C -0.095 4.095 13 C 0.079 3.921 14 H 0.077 0.923 15 C -0.150 4.150 16 C -0.145 4.145 17 C 0.038 3.962 18 O -0.410 6.410 19 H 0.283 0.717 20 H 0.070 0.930 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.049 0.951 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.871 -8.718 -0.898 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.196 4.196 3 Si 0.998 3.002 4 H -0.238 1.238 5 H -0.215 1.215 6 H -0.223 1.223 7 C -0.639 4.639 8 H 0.081 0.919 9 C 0.251 3.749 10 O -0.507 6.507 11 C -0.175 4.175 12 C -0.132 4.132 13 C 0.022 3.978 14 H 0.095 0.905 15 C -0.187 4.187 16 C -0.182 4.182 17 C -0.038 4.038 18 O -0.331 6.331 19 H 0.094 0.906 20 H 0.089 0.911 21 H 0.100 0.900 22 H 0.093 0.907 23 H 0.068 0.932 24 H 0.119 0.881 25 H 0.092 0.908 26 H 0.118 0.882 27 H 0.108 0.892 28 H 0.087 0.913 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.689 -6.818 -0.653 16.207 hybrid contribution -0.366 -2.109 -0.036 2.141 sum 14.323 -8.927 -0.689 16.891 Atomic orbital electron populations 1.70565 1.08301 1.32827 1.32826 1.28417 0.95741 1.07841 0.87575 0.81827 0.70749 0.69058 0.78587 1.23840 1.21460 1.22338 1.22197 0.95751 0.96037 1.49879 0.91900 1.20293 0.89800 0.89572 0.75276 1.89849 1.71637 1.34898 1.54334 1.21635 0.95940 0.97542 1.02355 1.21398 0.93719 0.96001 1.02096 1.23122 0.95100 0.89519 0.90065 0.90527 1.23308 0.93407 0.98362 1.03633 1.23100 0.98796 0.95945 1.00400 1.23337 0.84813 0.96439 0.99262 1.88434 1.34769 1.57171 1.52716 0.90649 0.91119 0.89974 0.90684 0.93185 0.88113 0.90795 0.88221 0.89153 0.91309 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -47.11 13.64 21.91 0.30 -46.82 15 2 C 0.02 1.28 5.53 85.43 0.47 1.75 15 3 Si 1.17 60.61 25.97 68.60 1.78 62.39 15 4 H -0.31 -14.89 7.11 99.48 0.71 -14.19 15 5 H -0.29 -14.70 7.11 99.48 0.71 -13.99 15 6 H -0.29 -15.97 6.77 99.48 0.67 -15.29 15 7 C -0.61 -35.38 9.66 23.49 0.23 -35.16 15 8 H 0.06 3.66 8.06 -2.91 -0.02 3.63 15 9 C 0.35 18.88 6.74 26.37 0.18 19.06 15 10 O -0.61 -34.97 11.53 -3.49 -0.04 -35.01 15 11 C -0.14 -5.99 5.49 29.85 0.16 -5.83 15 12 C -0.09 -3.55 4.25 30.59 0.13 -3.42 15 13 C 0.08 2.31 3.43 31.26 0.11 2.42 15 14 H 0.08 2.08 8.14 -2.39 -0.02 2.07 15 15 C -0.15 -3.24 6.57 32.05 0.21 -3.03 15 16 C -0.15 -2.46 7.02 31.85 0.22 -2.23 15 17 C 0.04 0.84 7.79 72.45 0.56 1.40 15 18 O -0.41 -13.16 10.69 -148.98 -1.59 -14.75 15 19 H 0.28 15.66 8.72 -92.70 -0.81 14.85 15 20 H 0.07 3.13 7.90 -2.38 -0.02 3.11 15 21 H 0.08 3.31 8.14 -2.39 -0.02 3.29 15 22 H 0.07 2.77 8.10 -2.39 -0.02 2.75 15 23 H 0.05 2.05 8.10 -2.39 -0.02 2.03 15 24 H 0.10 1.79 8.14 -2.38 -0.02 1.77 15 25 H 0.07 1.70 8.06 -2.39 -0.02 1.68 15 26 H 0.10 1.29 8.14 -2.39 -0.02 1.27 15 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 15 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 15 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 15 Total: -1.00 -65.92 245.21 3.77 -62.15 By element: Atomic # 1 Polarization: -3.97 SS G_CDS: 1.04 Total: -2.93 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: 2.28 Total: -25.03 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.30 Total: -46.82 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -1.63 Total: -49.76 kcal Atomic # 14 Polarization: 60.61 SS G_CDS: 1.78 Total: 62.39 kcal Total: -65.92 3.77 -62.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083523854.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.869 kcal (2) G-P(sol) polarization free energy of solvation -65.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds