Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34227 * 122.71133 * 2 1 4 4 O 1.21222 * 125.58148 * 0.02562 * 3 2 1 5 5 C 1.51312 * 109.01858 * 179.97438 * 3 2 1 6 6 C 1.54229 * 103.69250 * 0.13197 * 5 3 2 7 7 H 1.09000 * 110.60432 * 118.59955 * 6 5 3 8 8 N 1.46493 * 110.60452 * 241.40435 * 6 5 3 9 9 C 1.36940 * 120.00038 * 205.00053 * 8 6 5 10 10 H 1.08001 * 119.99952 * 359.97438 * 9 8 6 11 11 C 1.38819 * 120.00222 * 180.02562 * 9 8 6 12 12 N 1.31619 * 119.99793 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00116 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47317 * 89.99851 * 13 11 9 15 15 H 1.48497 * 109.47450 * 210.00060 * 13 11 9 16 16 H 1.48499 * 109.47402 * 330.00225 * 13 11 9 17 17 C 1.33877 * 122.76400 * 180.10238 * 2 1 3 18 18 O 1.21225 * 125.39447 * 0.02562 * 17 2 1 19 19 H 1.08993 * 109.46593 * 269.89520 * 1 2 3 20 20 H 1.08993 * 109.47162 * 29.89504 * 1 2 3 21 21 H 1.09003 * 109.46895 * 149.89881 * 1 2 3 22 22 H 1.09002 * 110.60582 * 241.53725 * 5 3 2 23 23 H 1.09002 * 110.60920 * 118.72777 * 5 3 2 24 24 H 0.97006 * 120.00293 * 25.00316 * 8 6 5 25 25 H 0.96994 * 119.99701 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1904 1.1294 0.0000 4 8 1.7421 2.2557 0.0004 5 6 3.6605 0.7712 0.0006 6 6 3.6605 -0.7711 -0.0024 7 1 4.1497 -1.1529 -0.8985 8 7 4.3157 -1.2890 1.2011 9 6 4.8815 -2.5360 1.1899 10 1 4.8443 -3.1378 0.2938 11 6 5.5019 -3.0271 2.3305 12 7 5.5468 -2.2939 3.4226 13 14 6.2743 -4.7277 2.3149 14 1 7.6932 -4.6232 1.8894 15 1 6.2082 -5.3140 3.6776 16 1 5.5357 -5.5982 1.3652 17 6 2.1896 -1.1258 -0.0020 18 8 1.7385 -2.2510 -0.0045 19 1 -0.3632 -0.0019 1.0276 20 1 -0.3633 0.8909 -0.5122 21 1 -0.3633 -0.8891 -0.5154 22 1 4.1480 1.1531 0.8977 23 1 4.1497 1.1566 -0.8940 24 1 4.3488 -0.7487 2.0060 25 1 5.9806 -2.6368 4.2195 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084110782.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = -72.471121 kcal Electronic energy + Delta-G solvation = -12568.932623 eV Core-core repulsion = 10161.348544 eV Total energy + Delta-G solvation = -2407.584079 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.67787 -39.56046 -37.11198 -36.43184 -34.07132 -31.47184 -27.87939 -26.88886 -25.19225 -22.87847 -20.51657 -19.51592 -18.18563 -17.87918 -17.43677 -16.50006 -15.75966 -15.55191 -15.36633 -15.12307 -14.70327 -14.04517 -13.52509 -13.48352 -12.94199 -12.85211 -12.63235 -12.21543 -11.92249 -11.86979 -11.25430 -10.83839 -10.76254 -9.21163 -8.02915 -5.35279 0.55324 1.48384 1.51268 1.60054 1.64018 1.80649 2.53638 3.21101 3.28052 3.59182 3.63260 3.90028 4.28565 4.33818 4.40770 4.55294 4.69214 4.84921 4.90803 5.50683 5.85353 6.16134 6.35503 6.87081 7.25424 7.83574 8.09882 9.18867 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.057698 B = 0.009876 C = 0.009085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.167673 B = 2834.418624 C = 3081.188240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.580 5.580 3 C 0.539 3.461 4 O -0.517 6.517 5 C -0.148 4.148 6 C 0.146 3.854 7 H 0.122 0.878 8 N -0.703 5.703 9 C -0.252 4.252 10 H 0.082 0.918 11 C -0.062 4.062 12 N -0.963 5.963 13 Si 0.974 3.026 14 H -0.278 1.278 15 H -0.297 1.297 16 H -0.274 1.274 17 C 0.496 3.504 18 O -0.520 6.520 19 H 0.069 0.931 20 H 0.099 0.901 21 H 0.085 0.915 22 H 0.126 0.874 23 H 0.160 0.840 24 H 0.383 0.617 25 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.835 5.674 -8.087 10.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.324 5.324 3 C 0.330 3.670 4 O -0.392 6.392 5 C -0.188 4.188 6 C 0.032 3.968 7 H 0.140 0.860 8 N -0.343 5.343 9 C -0.384 4.384 10 H 0.099 0.901 11 C -0.255 4.255 12 N -0.611 5.611 13 Si 0.803 3.197 14 H -0.204 1.204 15 H -0.223 1.223 16 H -0.199 1.199 17 C 0.283 3.717 18 O -0.392 6.392 19 H 0.088 0.912 20 H 0.118 0.882 21 H 0.104 0.896 22 H 0.144 0.856 23 H 0.178 0.822 24 H 0.217 0.783 25 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.267 5.469 -8.120 11.117 hybrid contribution -0.008 -0.857 0.770 1.152 sum -5.276 4.612 -7.351 10.156 Atomic orbital electron populations 1.22031 0.77373 1.04951 1.03765 1.47099 1.10088 1.09513 1.65748 1.21170 0.90876 0.82887 0.72036 1.90711 1.78752 1.21809 1.47945 1.22865 0.92172 0.94603 1.09185 1.21298 0.87444 0.93839 0.94262 0.86034 1.42452 1.63473 1.17766 1.10634 1.19624 1.27673 0.93329 0.97727 0.90055 1.25582 1.02215 1.02193 0.95559 1.69786 1.49725 1.38931 1.02681 0.85142 0.78562 0.79578 0.76454 1.20427 1.22343 1.19897 1.23510 0.93081 0.83263 0.71888 1.90637 1.78791 1.23251 1.46476 0.91226 0.88237 0.89589 0.85636 0.82248 0.78300 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.53 10.59 127.77 1.35 2.88 15 2 N -0.58 -18.04 2.96 -779.55 -2.31 -20.35 15 3 C 0.54 15.84 8.09 87.94 0.71 16.55 15 4 O -0.52 -17.01 17.50 -2.85 -0.05 -17.06 15 5 C -0.15 -3.84 6.78 30.46 0.21 -3.63 15 6 C 0.15 5.05 3.75 44.86 0.17 5.22 15 7 H 0.12 3.82 8.09 -2.39 -0.02 3.80 15 8 N -0.70 -32.45 5.16 -323.59 -1.67 -34.12 15 9 C -0.25 -13.29 9.96 84.03 0.84 -12.46 15 10 H 0.08 4.17 7.83 -2.91 -0.02 4.14 15 11 C -0.06 -3.42 5.50 84.86 0.47 -2.96 15 12 N -0.96 -56.20 13.06 21.65 0.28 -55.92 15 13 Si 0.97 44.76 29.55 68.60 2.03 46.78 15 14 H -0.28 -12.26 7.11 99.48 0.71 -11.55 15 15 H -0.30 -13.85 7.11 99.48 0.71 -13.15 15 16 H -0.27 -12.23 7.11 99.48 0.71 -11.53 15 17 C 0.50 18.52 7.72 87.99 0.68 19.20 15 18 O -0.52 -23.47 17.48 -2.86 -0.05 -23.52 15 19 H 0.07 1.73 8.14 -2.39 -0.02 1.71 15 20 H 0.10 2.14 7.84 -2.39 -0.02 2.12 15 21 H 0.09 2.12 7.83 -2.39 -0.02 2.10 15 22 H 0.13 3.31 7.71 -2.39 -0.02 3.29 15 23 H 0.16 2.85 8.14 -2.39 -0.02 2.83 15 24 H 0.38 18.73 7.58 -92.70 -0.70 18.03 15 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 15 Total: -1.00 -67.02 230.88 3.16 -63.86 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.51 Total: 15.52 kcal Atomic # 6 Polarization: 20.38 SS G_CDS: 4.42 Total: 24.81 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -3.70 Total: -110.39 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.10 Total: -40.59 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -67.02 3.16 -63.86 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084110782.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.609 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds