Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00268 * 2 1 4 4 H 1.48501 * 109.47191 * 240.00668 * 3 2 1 5 5 H 1.48495 * 109.47039 * 119.99954 * 3 2 1 6 6 H 1.48504 * 109.46848 * 0.02562 * 3 2 1 7 7 C 1.37875 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00316 * 175.11962 * 7 2 1 9 9 C 1.50701 * 119.99976 * 355.11059 * 7 2 1 10 10 H 1.09000 * 109.46978 * 35.22524 * 9 7 2 11 11 C 1.53005 * 109.47183 * 155.22434 * 9 7 2 12 12 C 1.53005 * 109.46813 * 60.00030 * 11 9 7 13 13 C 1.53005 * 109.46701 * 60.00268 * 12 11 9 14 14 C 1.52996 * 109.47171 * 299.99571 * 13 12 11 15 15 H 1.08997 * 109.47088 * 300.00568 * 14 13 12 16 16 C 1.50699 * 109.47018 * 180.02562 * 14 13 12 17 17 O 1.20822 * 120.00282 * 240.00118 * 16 14 13 18 18 O 1.34233 * 119.99688 * 60.00238 * 16 14 13 19 19 C 1.52995 * 109.46962 * 60.00209 * 14 13 12 20 20 H 0.96997 * 120.00305 * 185.13706 * 1 2 3 21 21 H 1.08997 * 109.47135 * 179.97438 * 11 9 7 22 22 H 1.09001 * 109.47001 * 300.00446 * 11 9 7 23 23 H 1.08997 * 109.47236 * 299.99897 * 12 11 9 24 24 H 1.08994 * 109.46684 * 179.97438 * 12 11 9 25 25 H 1.09000 * 109.46667 * 179.97438 * 13 12 11 26 26 H 1.09001 * 109.47193 * 60.00134 * 13 12 11 27 27 H 0.96708 * 116.99301 * 179.97438 * 18 16 14 28 28 H 1.09006 * 109.47008 * 179.97438 * 19 14 13 29 29 H 1.09000 * 109.47431 * 60.00276 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 3.1029 1.6963 1.2125 6 1 1.2842 2.7465 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0815 -1.1958 -0.0801 9 6 1.2551 -2.4968 0.1101 10 1 0.3050 -2.4154 -0.4178 11 6 2.0890 -3.6193 -0.5109 12 6 3.4227 -3.7335 0.2303 13 6 3.1614 -4.0481 1.7047 14 6 2.3275 -2.9257 2.3256 15 1 2.8695 -1.9834 2.2456 16 6 2.0707 -3.2352 3.7779 17 8 0.9372 -3.3527 4.1794 18 8 3.1014 -3.3804 4.6256 19 6 0.9940 -2.8114 1.5844 20 1 -0.4850 -0.8366 0.0752 21 1 1.5472 -4.5616 -0.4304 22 1 2.2751 -3.3952 -1.5612 23 1 3.9648 -2.7913 0.1502 24 1 4.0166 -4.5334 -0.2118 25 1 4.1116 -4.1299 2.2326 26 1 2.6194 -4.9904 1.7846 27 1 2.8869 -3.5781 5.5476 28 1 0.3996 -2.0120 2.0271 29 1 0.4518 -3.7536 1.6644 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233317.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = -125.692687 kcal Electronic energy + Delta-G solvation = -13189.473687 eV Core-core repulsion = 10883.122091 eV Total energy + Delta-G solvation = -2306.351596 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.04063 -37.55030 -35.69731 -32.89581 -30.47224 -29.37030 -24.43713 -23.83049 -21.63251 -20.44335 -19.04618 -17.61011 -16.28512 -15.92564 -15.31218 -14.24079 -13.87395 -13.57432 -13.08431 -13.04278 -12.17730 -11.76557 -11.54891 -11.21067 -10.94393 -10.84071 -10.69961 -10.37870 -10.18514 -10.09078 -9.94002 -9.40877 -9.00336 -8.44681 -8.19720 -6.31454 -4.03382 2.67227 3.43780 3.44452 3.52765 3.63426 4.53910 5.32923 5.36270 5.44113 5.53299 5.97132 6.06998 6.16882 6.21471 6.33488 6.41857 6.46684 6.68146 6.80520 6.86629 6.97606 7.01341 7.15433 7.43082 7.57456 8.27632 8.32290 8.46471 8.91226 9.69109 11.06457 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.032515 B = 0.013350 C = 0.011777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.944160 B = 2096.836911 C = 2376.917499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.019 3.981 3 Si 1.061 2.939 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.592 4.592 8 H 0.054 0.946 9 C 0.026 3.974 10 H 0.036 0.964 11 C -0.104 4.104 12 C -0.109 4.109 13 C -0.100 4.100 14 C -0.065 4.065 15 H 0.120 0.880 16 C 0.478 3.522 17 O -0.522 6.522 18 O -0.522 6.522 19 C -0.087 4.087 20 H 0.271 0.729 21 H 0.033 0.967 22 H 0.052 0.948 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.398 0.602 28 H 0.059 0.941 29 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.758 -6.200 4.360 10.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.185 4.185 3 Si 0.890 3.110 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.630 4.630 8 H 0.072 0.928 9 C 0.007 3.993 10 H 0.054 0.946 11 C -0.142 4.142 12 C -0.147 4.147 13 C -0.138 4.138 14 C -0.084 4.084 15 H 0.137 0.863 16 C 0.321 3.679 17 O -0.410 6.410 18 O -0.333 6.333 19 C -0.125 4.125 20 H 0.082 0.918 21 H 0.052 0.948 22 H 0.070 0.930 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.255 0.745 28 H 0.078 0.922 29 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 6.330 -4.492 3.977 8.722 hybrid contribution 0.016 -1.763 0.851 1.958 sum 6.347 -6.255 4.829 10.135 Atomic orbital electron populations 1.70780 1.06893 1.31105 1.46032 1.25764 0.96542 1.02497 0.93715 0.83650 0.75016 0.75847 0.76478 1.21490 1.21490 1.20896 1.21944 0.94523 0.91319 1.55181 0.92826 1.18894 0.96241 0.94070 0.90103 0.94625 1.21506 0.95694 0.97910 0.99070 1.21462 0.98418 1.01201 0.93569 1.21417 0.98630 0.96534 0.97171 1.21094 1.01468 1.01883 0.83959 0.86276 1.24367 0.82115 0.71404 0.89993 1.90654 1.24295 1.47135 1.78965 1.84621 1.41082 1.83443 1.24143 1.21572 0.92559 0.99502 0.98874 0.91764 0.94848 0.92963 0.90703 0.93602 0.91982 0.92818 0.74503 0.92186 0.94724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.08 13.63 55.43 0.76 -26.32 15 2 C 0.02 0.53 5.45 -17.82 -0.10 0.44 15 3 Si 1.06 24.60 29.91 -169.99 -5.08 19.52 15 4 H -0.29 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 15 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 7 C -0.59 -15.44 6.73 -34.44 -0.23 -15.67 15 8 H 0.05 1.37 6.09 -52.49 -0.32 1.05 15 9 C 0.03 0.61 2.31 -91.77 -0.21 0.40 15 10 H 0.04 0.94 6.67 -51.93 -0.35 0.59 15 11 C -0.10 -2.10 5.44 -26.73 -0.15 -2.25 15 12 C -0.11 -1.94 5.70 -26.73 -0.15 -2.09 15 13 C -0.10 -1.70 5.14 -26.73 -0.14 -1.84 15 14 C -0.07 -1.29 2.41 -91.78 -0.22 -1.51 15 15 H 0.12 2.51 7.22 -51.93 -0.37 2.13 15 16 C 0.48 8.91 7.63 36.01 0.27 9.19 15 17 O -0.52 -11.19 16.74 -18.75 -0.31 -11.51 15 18 O -0.52 -7.62 13.33 -39.26 -0.52 -8.15 15 19 C -0.09 -1.97 4.01 -26.74 -0.11 -2.08 15 20 H 0.27 8.04 6.66 -40.82 -0.27 7.76 15 21 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.05 1.06 8.14 -51.93 -0.42 0.64 15 23 H 0.07 1.42 6.30 -51.93 -0.33 1.09 15 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 25 H 0.06 0.94 8.11 -51.93 -0.42 0.52 15 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 27 H 0.40 3.88 9.10 45.56 0.41 4.29 15 28 H 0.06 1.53 8.10 -51.93 -0.42 1.11 15 29 H 0.03 0.75 8.10 -51.93 -0.42 0.33 15 LS Contribution 238.66 15.07 3.60 3.60 Total: -1.00 -30.51 238.66 -5.57 -36.09 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -2.97 Total: 2.18 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -1.03 Total: -15.41 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.76 Total: -26.32 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.84 Total: -19.65 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.51 -5.57 -36.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233317.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.607 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds