Wall clock time and date at job start Mon Mar 30 2020 02:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00268 * 2 1 4 4 H 1.48501 * 109.47191 * 240.00668 * 3 2 1 5 5 H 1.48495 * 109.47039 * 119.99954 * 3 2 1 6 6 H 1.48504 * 109.46848 * 0.02562 * 3 2 1 7 7 C 1.37875 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00316 * 175.11962 * 7 2 1 9 9 C 1.50701 * 119.99976 * 355.11059 * 7 2 1 10 10 H 1.09000 * 109.46978 * 35.22524 * 9 7 2 11 11 C 1.53005 * 109.47183 * 155.22434 * 9 7 2 12 12 C 1.53005 * 109.46813 * 60.00030 * 11 9 7 13 13 C 1.53005 * 109.46701 * 60.00268 * 12 11 9 14 14 C 1.52996 * 109.47171 * 299.99571 * 13 12 11 15 15 H 1.08997 * 109.47088 * 300.00568 * 14 13 12 16 16 C 1.50699 * 109.47018 * 180.02562 * 14 13 12 17 17 O 1.20822 * 120.00282 * 240.00118 * 16 14 13 18 18 O 1.34233 * 119.99688 * 60.00238 * 16 14 13 19 19 C 1.52995 * 109.46962 * 60.00209 * 14 13 12 20 20 H 0.96997 * 120.00305 * 185.13706 * 1 2 3 21 21 H 1.08997 * 109.47135 * 179.97438 * 11 9 7 22 22 H 1.09001 * 109.47001 * 300.00446 * 11 9 7 23 23 H 1.08997 * 109.47236 * 299.99897 * 12 11 9 24 24 H 1.08994 * 109.46684 * 179.97438 * 12 11 9 25 25 H 1.09000 * 109.46667 * 179.97438 * 13 12 11 26 26 H 1.09001 * 109.47193 * 60.00134 * 13 12 11 27 27 H 0.96708 * 116.99301 * 179.97438 * 18 16 14 28 28 H 1.09006 * 109.47008 * 179.97438 * 19 14 13 29 29 H 1.09000 * 109.47431 * 60.00276 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 3.1029 1.6963 1.2125 6 1 1.2842 2.7465 0.0006 7 6 2.0045 -1.1940 -0.0005 8 1 3.0815 -1.1958 -0.0801 9 6 1.2551 -2.4968 0.1101 10 1 0.3050 -2.4154 -0.4178 11 6 2.0890 -3.6193 -0.5109 12 6 3.4227 -3.7335 0.2303 13 6 3.1614 -4.0481 1.7047 14 6 2.3275 -2.9257 2.3256 15 1 2.8695 -1.9834 2.2456 16 6 2.0707 -3.2352 3.7779 17 8 0.9372 -3.3527 4.1794 18 8 3.1014 -3.3804 4.6256 19 6 0.9940 -2.8114 1.5844 20 1 -0.4850 -0.8366 0.0752 21 1 1.5472 -4.5616 -0.4304 22 1 2.2751 -3.3952 -1.5612 23 1 3.9648 -2.7913 0.1502 24 1 4.0166 -4.5334 -0.2118 25 1 4.1116 -4.1299 2.2326 26 1 2.6194 -4.9904 1.7846 27 1 2.8869 -3.5781 5.5476 28 1 0.3996 -2.0120 2.0271 29 1 0.4518 -3.7536 1.6644 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233317.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:10 Heat of formation + Delta-G solvation = -145.559129 kcal Electronic energy + Delta-G solvation = -13190.335161 eV Core-core repulsion = 10883.122091 eV Total energy + Delta-G solvation = -2307.213070 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.52985 -39.17650 -37.08718 -34.85059 -32.09276 -31.12132 -26.50789 -25.36150 -23.25724 -21.96009 -20.81979 -19.03627 -18.02069 -17.63767 -16.82171 -15.79754 -15.66792 -15.34284 -14.82580 -14.52547 -13.82547 -13.39408 -13.15576 -12.79156 -12.61377 -12.55993 -12.44569 -12.05594 -11.92128 -11.76165 -11.54859 -11.03133 -10.73592 -10.47606 -10.20428 -8.50093 -6.21029 1.20052 1.55596 1.62853 1.80279 2.17215 2.62528 3.28828 3.81095 3.92386 4.07805 4.45288 4.57098 4.59701 4.70266 4.75974 4.84951 4.91234 5.08531 5.21521 5.23348 5.43290 5.51921 5.54390 5.58528 5.77048 6.23418 6.34199 6.74965 7.01899 7.59865 8.88016 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.032515 B = 0.013350 C = 0.011777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.944160 B = 2096.836911 C = 2376.917499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.038 4.038 3 Si 1.105 2.895 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.294 1.294 7 C -0.583 4.583 8 H 0.063 0.937 9 C 0.017 3.983 10 H -0.002 1.002 11 C -0.102 4.102 12 C -0.104 4.104 13 C -0.093 4.093 14 C -0.066 4.066 15 H 0.106 0.894 16 C 0.488 3.512 17 O -0.557 6.557 18 O -0.504 6.504 19 C -0.076 4.076 20 H 0.255 0.745 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.065 0.935 27 H 0.424 0.576 28 H 0.017 0.983 29 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.350 -7.194 4.973 12.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.236 4.236 3 Si 0.928 3.072 4 H -0.194 1.194 5 H -0.194 1.194 6 H -0.221 1.221 7 C -0.621 4.621 8 H 0.081 0.919 9 C -0.001 4.001 10 H 0.016 0.984 11 C -0.139 4.139 12 C -0.142 4.142 13 C -0.130 4.130 14 C -0.085 4.085 15 H 0.124 0.876 16 C 0.333 3.667 17 O -0.448 6.448 18 O -0.317 6.317 19 C -0.115 4.115 20 H 0.066 0.934 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.080 0.920 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.285 0.715 28 H 0.036 0.964 29 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.967 -5.515 4.610 11.492 hybrid contribution -0.775 -1.519 0.695 1.841 sum 8.192 -7.035 5.305 12.030 Atomic orbital electron populations 1.70903 1.08195 1.30221 1.49358 1.27128 0.96534 1.06395 0.93494 0.83092 0.74212 0.71920 0.78003 1.19358 1.19434 1.22067 1.22292 0.95022 0.92026 1.52777 0.91894 1.18924 0.95078 0.95191 0.90938 0.98425 1.21448 0.96850 0.96853 0.98792 1.21431 0.96802 1.01972 0.93959 1.21427 0.99508 0.95487 0.96585 1.20952 0.99611 1.02773 0.85186 0.87610 1.23950 0.82050 0.70717 0.89984 1.90658 1.25789 1.48884 1.79505 1.84526 1.38995 1.82529 1.25669 1.21320 0.94124 0.97914 0.98116 0.93433 0.93268 0.93491 0.91961 0.89991 0.88995 0.91657 0.71514 0.96422 0.94409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.57 13.63 21.45 0.29 -58.28 15 2 C -0.04 -2.15 5.45 84.65 0.46 -1.69 15 3 Si 1.10 49.46 29.91 68.60 2.05 51.52 15 4 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 15 7 C -0.58 -30.58 6.73 25.60 0.17 -30.41 15 8 H 0.06 3.14 6.09 -2.91 -0.02 3.12 15 9 C 0.02 0.85 2.31 -11.54 -0.03 0.82 15 10 H 0.00 -0.14 6.67 -2.39 -0.02 -0.15 15 11 C -0.10 -3.96 5.44 30.60 0.17 -3.79 15 12 C -0.10 -3.35 5.70 30.60 0.17 -3.17 15 13 C -0.09 -2.81 5.14 30.59 0.16 -2.65 15 14 C -0.07 -2.51 2.41 -11.54 -0.03 -2.54 15 15 H 0.11 4.32 7.22 -2.39 -0.02 4.30 15 16 C 0.49 17.27 7.63 71.24 0.54 17.81 15 17 O -0.56 -23.48 16.74 21.98 0.37 -23.11 15 18 O -0.50 -12.89 13.33 -51.44 -0.69 -13.57 15 19 C -0.08 -3.52 4.01 30.59 0.12 -3.40 15 20 H 0.26 16.09 6.66 -92.71 -0.62 15.47 15 21 H 0.05 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.05 1.85 8.14 -2.39 -0.02 1.83 15 23 H 0.06 2.17 6.30 -2.39 -0.02 2.15 15 24 H 0.08 2.10 8.14 -2.39 -0.02 2.08 15 25 H 0.09 2.31 8.11 -2.39 -0.02 2.29 15 26 H 0.06 1.86 8.14 -2.39 -0.02 1.85 15 27 H 0.42 6.60 9.10 -74.05 -0.67 5.93 15 28 H 0.02 0.92 8.10 -2.38 -0.02 0.90 15 29 H 0.04 1.67 8.10 -2.39 -0.02 1.65 15 Total: -1.00 -67.43 238.66 4.40 -63.03 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.63 Total: 9.43 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: 1.74 Total: -29.02 kcal Atomic # 7 Polarization: -58.57 SS G_CDS: 0.29 Total: -58.28 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.32 Total: -36.68 kcal Atomic # 14 Polarization: 49.46 SS G_CDS: 2.05 Total: 51.52 kcal Total: -67.43 4.40 -63.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233317.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.531 kcal (2) G-P(sol) polarization free energy of solvation -67.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds