Wall clock time and date at job start Mon Mar 30 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46879 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00009 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99377 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00342 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46647 * 60.00273 * 9 7 2 11 11 C 1.52997 * 109.47238 * 300.00471 * 9 7 2 12 12 C 1.53006 * 109.47164 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.46626 * 59.99702 * 12 11 9 14 14 C 1.52997 * 109.47592 * 300.00035 * 13 12 11 15 15 H 1.09000 * 109.47140 * 300.00346 * 14 13 12 16 16 C 1.50699 * 109.47265 * 180.02562 * 14 13 12 17 17 O 1.20821 * 120.00365 * 239.99971 * 16 14 13 18 18 O 1.34231 * 120.00154 * 59.99914 * 16 14 13 19 19 C 1.52996 * 109.47165 * 60.00300 * 14 13 12 20 20 H 0.97005 * 120.00032 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46922 * 59.99800 * 11 9 7 22 22 H 1.09000 * 109.47140 * 299.99500 * 11 9 7 23 23 H 1.08993 * 109.46955 * 180.02562 * 12 11 9 24 24 H 1.09000 * 109.47050 * 300.00004 * 12 11 9 25 25 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 26 26 H 1.09002 * 109.46719 * 180.02562 * 13 12 11 27 27 H 0.96694 * 117.00513 * 179.97438 * 18 16 14 28 28 H 1.08992 * 109.47534 * 180.02562 * 19 14 13 29 29 H 1.08996 * 109.47134 * 59.99508 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6241 -2.5574 -0.8881 11 6 0.3718 -2.5793 1.2512 12 6 -0.3937 -3.9042 1.2521 13 6 0.6003 -5.0673 1.2522 14 6 1.4795 -4.9871 0.0027 15 1 0.8525 -5.0450 -0.8871 16 6 2.4580 -6.1332 0.0025 17 8 3.6460 -5.9133 0.0020 18 8 2.0098 -7.3985 0.0030 19 6 2.2449 -3.6624 0.0018 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3365 -1.7508 1.2509 22 1 0.9987 -2.5211 2.1410 23 1 -1.0204 -3.9611 2.1420 24 1 -1.0207 -3.9621 0.3623 25 1 1.2272 -5.0094 2.1420 26 1 0.0549 -6.0111 1.2523 27 1 2.6752 -8.1000 0.0025 28 1 2.8709 -3.6050 -0.8885 29 1 2.8718 -3.6044 0.8916 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233319.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:13 Heat of formation + Delta-G solvation = -123.802550 kcal Electronic energy + Delta-G solvation = -12913.664377 eV Core-core repulsion = 10607.394744 eV Total energy + Delta-G solvation = -2306.269634 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.13429 -37.31114 -35.80552 -32.95055 -30.19160 -29.78560 -24.82081 -23.78336 -21.15054 -20.42520 -18.78411 -17.68060 -16.69138 -15.66003 -15.33396 -14.51148 -13.98708 -13.29743 -13.09439 -12.85494 -12.30162 -11.80044 -11.65429 -11.29560 -10.92085 -10.68696 -10.61820 -10.42398 -10.15878 -10.10447 -9.80126 -9.39296 -9.04424 -8.67174 -8.27848 -5.96708 -4.02525 2.53195 3.34538 3.37294 3.38636 3.43206 4.46312 5.25576 5.30047 5.36264 5.46765 5.89211 6.01622 6.17197 6.26041 6.39613 6.55165 6.67755 6.70292 6.72804 6.89357 7.10073 7.24678 7.50244 7.77074 8.00520 8.15513 8.19576 8.47775 9.00961 9.62027 11.09017 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.054577 B = 0.009707 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.917334 B = 2883.806104 C = 3275.672160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.055 0.945 9 C 0.051 3.949 10 H 0.027 0.973 11 C -0.114 4.114 12 C -0.118 4.118 13 C -0.103 4.103 14 C -0.078 4.078 15 H 0.102 0.898 16 C 0.479 3.521 17 O -0.518 6.518 18 O -0.522 6.522 19 C -0.091 4.091 20 H 0.260 0.740 21 H 0.093 0.907 22 H 0.035 0.965 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.400 0.600 28 H 0.055 0.945 29 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 -10.046 1.205 10.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.045 0.955 11 C -0.152 4.152 12 C -0.155 4.155 13 C -0.141 4.141 14 C -0.097 4.097 15 H 0.120 0.880 16 C 0.322 3.678 17 O -0.405 6.405 18 O -0.333 6.333 19 C -0.129 4.129 20 H 0.070 0.930 21 H 0.112 0.888 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.257 0.743 28 H 0.074 0.926 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.287 -9.531 1.205 9.611 hybrid contribution 0.975 0.370 -0.016 1.043 sum 0.688 -9.161 1.190 9.264 Atomic orbital electron populations 1.69864 1.05835 1.26451 1.50878 1.24945 0.94849 0.98987 0.95133 0.86678 0.79609 0.83190 0.78636 1.20311 1.21358 1.20317 1.21159 0.92973 0.90548 1.50425 0.92689 1.18662 0.92446 0.91108 0.94545 0.95464 1.21678 0.99634 0.95174 0.98743 1.21636 0.97210 0.96116 1.00578 1.21491 0.97536 0.99359 0.95672 1.21310 0.95733 0.91011 1.01642 0.87968 1.24175 0.89515 0.83313 0.70790 1.90678 1.18827 1.85299 1.45728 1.84606 1.45339 1.17417 1.85944 1.21628 0.98421 0.91121 1.01729 0.93013 0.88827 0.94643 0.93247 0.92540 0.92177 0.92170 0.74275 0.92610 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 11.32 55.43 0.63 -24.49 15 2 C 0.06 1.70 5.30 -17.82 -0.09 1.61 15 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 15 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 15 7 C -0.51 -14.09 8.56 -34.44 -0.29 -14.39 15 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 15 9 C 0.05 1.24 2.10 -91.77 -0.19 1.05 15 10 H 0.03 0.71 8.14 -51.93 -0.42 0.29 15 11 C -0.11 -2.61 4.98 -26.73 -0.13 -2.74 15 12 C -0.12 -2.15 5.92 -26.73 -0.16 -2.31 15 13 C -0.10 -1.69 5.13 -26.73 -0.14 -1.83 15 14 C -0.08 -1.37 2.63 -91.78 -0.24 -1.61 15 15 H 0.10 1.70 8.14 -51.93 -0.42 1.27 15 16 C 0.48 7.96 7.63 36.01 0.27 8.24 15 17 O -0.52 -10.14 16.74 -18.75 -0.31 -10.45 15 18 O -0.52 -6.68 13.33 -39.26 -0.52 -7.20 15 19 C -0.09 -1.95 3.72 -26.73 -0.10 -2.05 15 20 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.09 2.40 6.07 -51.93 -0.32 2.09 15 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.05 0.82 8.14 -51.93 -0.42 0.39 15 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.06 0.86 8.11 -51.93 -0.42 0.44 15 27 H 0.40 3.24 9.10 45.56 0.41 3.66 15 28 H 0.06 1.22 8.10 -51.93 -0.42 0.80 15 29 H 0.06 1.28 8.10 -51.93 -0.42 0.86 15 LS Contribution 242.61 15.07 3.66 3.66 Total: -1.00 -30.00 242.61 -5.89 -35.89 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.24 Total: 0.32 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -1.08 Total: -14.04 kcal Atomic # 7 Polarization: -25.12 SS G_CDS: 0.63 Total: -24.49 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.84 Total: -17.66 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.00 -5.89 -35.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233319.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.912 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds