Wall clock time and date at job start Mon Mar 30 2020 02:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48500 * 109.46879 * 240.00065 * 3 2 1 5 5 H 1.48503 * 109.47155 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00009 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99377 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00342 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46647 * 60.00273 * 9 7 2 11 11 C 1.52997 * 109.47238 * 300.00471 * 9 7 2 12 12 C 1.53006 * 109.47164 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.46626 * 59.99702 * 12 11 9 14 14 C 1.52997 * 109.47592 * 300.00035 * 13 12 11 15 15 H 1.09000 * 109.47140 * 300.00346 * 14 13 12 16 16 C 1.50699 * 109.47265 * 180.02562 * 14 13 12 17 17 O 1.20821 * 120.00365 * 239.99971 * 16 14 13 18 18 O 1.34231 * 120.00154 * 59.99914 * 16 14 13 19 19 C 1.52996 * 109.47165 * 60.00300 * 14 13 12 20 20 H 0.97005 * 120.00032 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46922 * 59.99800 * 11 9 7 22 22 H 1.09000 * 109.47140 * 299.99500 * 11 9 7 23 23 H 1.08993 * 109.46955 * 180.02562 * 12 11 9 24 24 H 1.09000 * 109.47050 * 300.00004 * 12 11 9 25 25 H 1.09000 * 109.47160 * 60.00369 * 13 12 11 26 26 H 1.09002 * 109.46719 * 180.02562 * 13 12 11 27 27 H 0.96694 * 117.00513 * 179.97438 * 18 16 14 28 28 H 1.08992 * 109.47534 * 180.02562 * 19 14 13 29 29 H 1.08996 * 109.47134 * 59.99508 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6241 -2.5574 -0.8881 11 6 0.3718 -2.5793 1.2512 12 6 -0.3937 -3.9042 1.2521 13 6 0.6003 -5.0673 1.2522 14 6 1.4795 -4.9871 0.0027 15 1 0.8525 -5.0450 -0.8871 16 6 2.4580 -6.1332 0.0025 17 8 3.6460 -5.9133 0.0020 18 8 2.0098 -7.3985 0.0030 19 6 2.2449 -3.6624 0.0018 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3365 -1.7508 1.2509 22 1 0.9987 -2.5211 2.1410 23 1 -1.0204 -3.9611 2.1420 24 1 -1.0207 -3.9621 0.3623 25 1 1.2272 -5.0094 2.1420 26 1 0.0549 -6.0111 1.2523 27 1 2.6752 -8.1000 0.0025 28 1 2.8709 -3.6050 -0.8885 29 1 2.8718 -3.6044 0.8916 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233319.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:13 Heat of formation + Delta-G solvation = -142.876437 kcal Electronic energy + Delta-G solvation = -12914.491483 eV Core-core repulsion = 10607.394744 eV Total energy + Delta-G solvation = -2307.096739 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.46227 -38.88914 -37.03914 -34.91154 -31.77321 -31.61184 -26.81409 -25.24949 -22.80634 -21.89088 -20.41857 -18.97783 -18.49601 -17.27301 -16.70691 -16.44180 -15.50961 -14.85478 -14.63793 -14.48514 -14.08715 -13.41816 -13.26952 -12.83387 -12.55870 -12.53514 -12.25984 -12.09080 -11.80817 -11.72860 -11.49910 -11.23488 -10.80772 -10.56596 -10.32844 -8.07120 -6.20434 1.23673 1.42242 1.42925 1.50756 2.17751 2.45482 3.19359 3.83941 3.90570 4.11562 4.50268 4.65947 4.66707 4.72916 4.82034 4.94242 5.09143 5.14590 5.28586 5.34280 5.49083 5.61360 5.66271 5.70996 6.03750 6.21558 6.43039 6.89919 7.06208 7.47055 8.96503 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.054577 B = 0.009707 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.917334 B = 2883.806104 C = 3275.672160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.540 4.540 8 H 0.044 0.956 9 C 0.048 3.952 10 H 0.004 0.996 11 C -0.109 4.109 12 C -0.110 4.110 13 C -0.094 4.094 14 C -0.078 4.078 15 H 0.116 0.884 16 C 0.493 3.507 17 O -0.553 6.553 18 O -0.505 6.505 19 C -0.082 4.082 20 H 0.261 0.739 21 H 0.062 0.938 22 H 0.024 0.976 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.425 0.575 28 H 0.041 0.959 29 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.465 -11.422 1.530 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.063 0.937 9 C 0.030 3.970 10 H 0.022 0.978 11 C -0.147 4.147 12 C -0.148 4.148 13 C -0.132 4.132 14 C -0.097 4.097 15 H 0.133 0.867 16 C 0.337 3.663 17 O -0.444 6.444 18 O -0.318 6.318 19 C -0.119 4.119 20 H 0.070 0.930 21 H 0.080 0.920 22 H 0.043 0.957 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.114 0.886 27 H 0.286 0.714 28 H 0.059 0.941 29 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.593 -10.945 1.531 11.068 hybrid contribution 1.059 0.756 -0.136 1.308 sum 0.466 -10.190 1.395 10.295 Atomic orbital electron populations 1.69986 1.06872 1.27150 1.51145 1.25647 0.95700 1.02015 0.94797 0.85749 0.78540 0.79513 0.78671 1.19942 1.20618 1.19931 1.21544 0.92855 0.92549 1.50886 0.93729 1.18616 0.92808 0.91307 0.94297 0.97766 1.21494 0.98845 0.97076 0.97284 1.21533 0.97372 0.94064 1.01824 1.21448 0.96964 0.99971 0.94789 1.21154 0.95787 0.89607 1.03134 0.86661 1.23688 0.88342 0.84244 0.70005 1.90684 1.20137 1.86029 1.47567 1.84512 1.45885 1.16474 1.84914 1.21362 0.97617 0.92640 1.00316 0.92961 0.91992 0.95665 0.91027 0.92271 0.92207 0.88615 0.71356 0.94061 0.93789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.28 11.32 21.45 0.24 -52.04 15 2 C 0.02 0.97 5.30 84.65 0.45 1.42 15 3 Si 0.95 44.19 29.54 68.60 2.03 46.21 15 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 15 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 15 6 H -0.27 -12.51 7.11 99.48 0.71 -11.81 15 7 C -0.54 -30.49 8.56 25.60 0.22 -30.27 15 8 H 0.04 2.53 7.74 -2.91 -0.02 2.51 15 9 C 0.05 2.40 2.10 -11.54 -0.02 2.38 15 10 H 0.00 0.23 8.14 -2.39 -0.02 0.21 15 11 C -0.11 -5.01 4.98 30.60 0.15 -4.86 15 12 C -0.11 -3.82 5.92 30.60 0.18 -3.64 15 13 C -0.09 -2.81 5.13 30.59 0.16 -2.65 15 14 C -0.08 -2.59 2.63 -11.54 -0.03 -2.62 15 15 H 0.12 3.57 8.14 -2.39 -0.02 3.55 15 16 C 0.49 15.16 7.63 71.24 0.54 15.70 15 17 O -0.55 -20.94 16.74 21.98 0.37 -20.57 15 18 O -0.50 -10.87 13.33 -51.43 -0.69 -11.55 15 19 C -0.08 -3.51 3.72 30.59 0.11 -3.40 15 20 H 0.26 14.27 8.31 -92.70 -0.77 13.50 15 21 H 0.06 3.24 6.07 -2.39 -0.01 3.23 15 22 H 0.02 1.16 8.14 -2.39 -0.02 1.14 15 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 15 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 15 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 15 26 H 0.10 2.26 8.11 -2.39 -0.02 2.24 15 27 H 0.43 5.10 9.10 -74.06 -0.67 4.43 15 28 H 0.04 1.84 8.10 -2.39 -0.02 1.82 15 29 H 0.04 1.98 8.10 -2.39 -0.02 1.96 15 Total: -1.00 -65.13 242.61 4.18 -60.96 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: 0.46 Total: 4.93 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 1.76 Total: -27.93 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.24 Total: -52.04 kcal Atomic # 8 Polarization: -31.81 SS G_CDS: -0.32 Total: -32.13 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -65.13 4.18 -60.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233319.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.920 kcal (2) G-P(sol) polarization free energy of solvation -65.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds