Wall clock time and date at job start Mon Mar 30 2020 02:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99759 * 2 1 4 4 H 1.48510 * 109.47005 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47234 * 119.99723 * 3 2 1 6 6 H 1.48491 * 109.47393 * 240.00045 * 3 2 1 7 7 C 1.37875 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00076 * 342.15393 * 7 2 1 9 9 C 1.50698 * 119.99779 * 162.15950 * 7 2 1 10 10 H 1.08998 * 109.47783 * 54.44505 * 9 7 2 11 11 C 1.53001 * 109.47000 * 294.44710 * 9 7 2 12 12 C 1.53007 * 109.46975 * 299.99975 * 11 9 7 13 13 C 1.53002 * 109.46818 * 300.00083 * 12 11 9 14 14 C 1.52996 * 109.47100 * 60.00095 * 13 12 11 15 15 C 1.52994 * 109.47266 * 299.99437 * 14 13 12 16 16 H 1.08996 * 109.47423 * 300.00550 * 15 14 13 17 17 C 1.50700 * 109.47382 * 180.02562 * 15 14 13 18 18 O 1.20821 * 120.00356 * 240.00127 * 17 15 14 19 19 O 1.34229 * 119.99749 * 60.00110 * 17 15 14 20 20 H 0.97001 * 119.99531 * 174.64918 * 1 2 3 21 21 H 1.08998 * 109.47348 * 59.99855 * 11 9 7 22 22 H 1.09007 * 109.47033 * 180.02562 * 11 9 7 23 23 H 1.09000 * 109.47011 * 180.02562 * 12 11 9 24 24 H 1.08997 * 109.47021 * 60.00319 * 12 11 9 25 25 H 1.08995 * 109.47015 * 299.99355 * 13 12 11 26 26 H 1.09004 * 109.46626 * 180.02562 * 13 12 11 27 27 H 1.08999 * 109.46603 * 179.97438 * 14 13 12 28 28 H 1.08996 * 109.47349 * 60.00033 * 14 13 12 29 29 H 0.96701 * 117.00190 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1028 1.6965 -1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 1.5035 -2.1070 0.2857 9 6 3.4572 -1.2251 -0.4004 10 1 4.0168 -0.5146 0.2078 11 6 3.5879 -0.8464 -1.8770 12 6 2.8023 -1.8440 -2.7308 13 6 3.3610 -3.2517 -2.5139 14 6 3.2303 -3.6304 -1.0373 15 6 4.0158 -2.6329 -0.1836 16 1 5.0665 -2.6554 -0.4728 17 6 3.8876 -3.0062 1.2708 18 8 3.3993 -2.2264 2.0539 19 8 4.3159 -4.2051 1.6963 20 1 -0.4849 -0.8364 -0.0783 21 1 3.1899 0.1565 -2.0315 22 1 4.6386 -0.8694 -2.1664 23 1 2.8958 -1.5744 -3.7828 24 1 1.7517 -1.8214 -2.4416 25 1 4.4116 -3.2742 -2.8032 26 1 2.8017 -3.9623 -3.1225 27 1 3.6279 -4.6334 -0.8829 28 1 2.1797 -3.6079 -0.7481 29 1 4.2123 -4.3995 2.6378 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233326.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:44 Heat of formation + Delta-G solvation = -113.394935 kcal Electronic energy + Delta-G solvation = -13451.883114 eV Core-core repulsion = 11146.064788 eV Total energy + Delta-G solvation = -2305.818326 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.80350 -37.43058 -35.31719 -32.48401 -30.52390 -29.94204 -24.87568 -22.97515 -21.52233 -20.45511 -18.66808 -17.20755 -16.69494 -15.93347 -15.04231 -14.32739 -13.68337 -13.37272 -13.23327 -12.75834 -12.32571 -11.83989 -11.50127 -11.09410 -10.88463 -10.57302 -10.52419 -10.39391 -9.96488 -9.81068 -9.63920 -9.33525 -9.09027 -8.61325 -8.06872 -6.27727 -3.84460 3.06177 3.45058 3.55997 3.70901 3.77817 4.64076 5.37488 5.43422 5.49849 5.59959 5.91955 6.09518 6.14801 6.22748 6.30701 6.35831 6.40486 6.57914 6.78033 6.85352 7.05395 7.14674 7.26511 7.28984 7.44757 8.20863 8.53489 8.70751 9.02893 9.76811 11.10682 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.017612 C = 0.013826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.789211 B = 1589.438410 C = 2024.718246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.032 3.968 3 Si 1.037 2.963 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.563 4.563 8 H 0.055 0.945 9 C 0.027 3.973 10 H 0.027 0.973 11 C -0.120 4.120 12 C -0.108 4.108 13 C -0.108 4.108 14 C -0.100 4.100 15 C -0.056 4.056 16 H 0.080 0.920 17 C 0.470 3.530 18 O -0.479 6.479 19 O -0.535 6.535 20 H 0.265 0.735 21 H 0.064 0.936 22 H 0.031 0.969 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.599 -6.068 -2.801 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.171 4.171 3 Si 0.866 3.134 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.601 4.601 8 H 0.073 0.927 9 C 0.008 3.992 10 H 0.045 0.955 11 C -0.158 4.158 12 C -0.145 4.145 13 C -0.145 4.145 14 C -0.137 4.137 15 C -0.075 4.075 16 H 0.098 0.902 17 C 0.311 3.689 18 O -0.363 6.363 19 O -0.347 6.347 20 H 0.074 0.926 21 H 0.083 0.917 22 H 0.049 0.951 23 H 0.058 0.942 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.286 -4.087 -2.925 9.691 hybrid contribution 0.150 -1.822 0.710 1.961 sum 8.436 -5.909 -2.215 10.535 Atomic orbital electron populations 1.70841 1.07102 1.30089 1.46852 1.25551 0.96056 1.02010 0.93493 0.84190 0.75552 0.76602 0.77013 1.21566 1.21197 1.20247 1.21687 0.93445 0.96273 1.48664 0.92691 1.19001 0.98551 0.89202 0.92429 0.95527 1.21959 0.96829 0.99521 0.97441 1.21393 1.02124 0.93759 0.97232 1.21429 0.99928 0.97709 0.95453 1.21395 1.01501 0.96088 0.94759 1.20995 1.00417 0.99824 0.86249 0.90223 1.23819 0.74253 0.78112 0.92726 1.90749 1.38527 1.50580 1.56425 1.84588 1.78626 1.38744 1.32747 0.92569 0.91726 0.95061 0.94190 0.90298 0.93092 0.92842 0.92857 0.90568 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.34 13.70 55.43 0.76 -27.58 15 2 C 0.03 0.94 5.33 -17.82 -0.09 0.85 15 3 Si 1.04 25.93 26.37 -169.99 -4.48 21.44 15 4 H -0.29 -7.33 7.11 56.52 0.40 -6.92 15 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 6 H -0.28 -6.23 5.61 56.52 0.32 -5.91 15 7 C -0.56 -15.44 5.29 -34.44 -0.18 -15.63 15 8 H 0.05 1.65 6.52 -52.49 -0.34 1.31 15 9 C 0.03 0.64 1.35 -91.77 -0.12 0.51 15 10 H 0.03 0.66 6.75 -51.93 -0.35 0.31 15 11 C -0.12 -2.50 5.15 -26.73 -0.14 -2.64 15 12 C -0.11 -2.07 5.70 -26.73 -0.15 -2.22 15 13 C -0.11 -1.79 5.92 -26.73 -0.16 -1.95 15 14 C -0.10 -1.83 4.91 -26.74 -0.13 -1.96 15 15 C -0.06 -1.11 2.39 -91.77 -0.22 -1.33 15 16 H 0.08 1.39 8.14 -51.93 -0.42 0.97 15 17 C 0.47 9.70 7.21 36.01 0.26 9.96 15 18 O -0.48 -11.88 15.52 -18.75 -0.29 -12.18 15 19 O -0.53 -8.65 13.33 -39.26 -0.52 -9.18 15 20 H 0.26 8.18 8.73 -40.82 -0.36 7.83 15 21 H 0.06 1.44 4.82 -51.93 -0.25 1.19 15 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.08 1.76 7.22 -51.93 -0.37 1.38 15 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 27 H 0.05 0.86 8.11 -51.93 -0.42 0.44 15 28 H 0.08 1.60 6.52 -51.93 -0.34 1.26 15 29 H 0.39 4.64 9.10 45.56 0.41 5.06 15 LS Contribution 230.47 15.07 3.47 3.47 Total: -1.00 -32.09 230.47 -5.02 -37.11 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -3.01 Total: 1.33 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: -0.94 Total: -14.42 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.76 Total: -27.58 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.81 Total: -21.35 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -4.48 Total: 21.44 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.09 -5.02 -37.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233326.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.287 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds