Wall clock time and date at job start Mon Mar 30 2020 02:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99759 * 2 1 4 4 H 1.48510 * 109.47005 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.47234 * 119.99723 * 3 2 1 6 6 H 1.48491 * 109.47393 * 240.00045 * 3 2 1 7 7 C 1.37875 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00076 * 342.15393 * 7 2 1 9 9 C 1.50698 * 119.99779 * 162.15950 * 7 2 1 10 10 H 1.08998 * 109.47783 * 54.44505 * 9 7 2 11 11 C 1.53001 * 109.47000 * 294.44710 * 9 7 2 12 12 C 1.53007 * 109.46975 * 299.99975 * 11 9 7 13 13 C 1.53002 * 109.46818 * 300.00083 * 12 11 9 14 14 C 1.52996 * 109.47100 * 60.00095 * 13 12 11 15 15 C 1.52994 * 109.47266 * 299.99437 * 14 13 12 16 16 H 1.08996 * 109.47423 * 300.00550 * 15 14 13 17 17 C 1.50700 * 109.47382 * 180.02562 * 15 14 13 18 18 O 1.20821 * 120.00356 * 240.00127 * 17 15 14 19 19 O 1.34229 * 119.99749 * 60.00110 * 17 15 14 20 20 H 0.97001 * 119.99531 * 174.64918 * 1 2 3 21 21 H 1.08998 * 109.47348 * 59.99855 * 11 9 7 22 22 H 1.09007 * 109.47033 * 180.02562 * 11 9 7 23 23 H 1.09000 * 109.47011 * 180.02562 * 12 11 9 24 24 H 1.08997 * 109.47021 * 60.00319 * 12 11 9 25 25 H 1.08995 * 109.47015 * 299.99355 * 13 12 11 26 26 H 1.09004 * 109.46626 * 180.02562 * 13 12 11 27 27 H 1.08999 * 109.46603 * 179.97438 * 14 13 12 28 28 H 1.08996 * 109.47349 * 60.00033 * 14 13 12 29 29 H 0.96701 * 117.00190 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2839 2.7465 0.0006 5 1 3.1028 1.6965 1.2126 6 1 3.1028 1.6965 -1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 1.5035 -2.1070 0.2857 9 6 3.4572 -1.2251 -0.4004 10 1 4.0168 -0.5146 0.2078 11 6 3.5879 -0.8464 -1.8770 12 6 2.8023 -1.8440 -2.7308 13 6 3.3610 -3.2517 -2.5139 14 6 3.2303 -3.6304 -1.0373 15 6 4.0158 -2.6329 -0.1836 16 1 5.0665 -2.6554 -0.4728 17 6 3.8876 -3.0062 1.2708 18 8 3.3993 -2.2264 2.0539 19 8 4.3159 -4.2051 1.6963 20 1 -0.4849 -0.8364 -0.0783 21 1 3.1899 0.1565 -2.0315 22 1 4.6386 -0.8694 -2.1664 23 1 2.8958 -1.5744 -3.7828 24 1 1.7517 -1.8214 -2.4416 25 1 4.4116 -3.2742 -2.8032 26 1 2.8017 -3.9623 -3.1225 27 1 3.6279 -4.6334 -0.8829 28 1 2.1797 -3.6079 -0.7481 29 1 4.2123 -4.3995 2.6378 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233326.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:44 Heat of formation + Delta-G solvation = -136.482718 kcal Electronic energy + Delta-G solvation = -13452.884275 eV Core-core repulsion = 11146.064788 eV Total energy + Delta-G solvation = -2306.819487 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.42055 -39.01878 -36.88725 -34.57166 -32.08950 -31.66447 -26.78981 -24.66683 -23.13735 -21.96580 -20.58569 -18.77364 -18.61219 -17.52685 -16.69635 -15.99634 -15.49267 -15.00646 -14.85136 -14.51336 -14.04733 -13.43200 -13.08793 -12.87476 -12.53030 -12.31695 -12.31063 -12.07669 -11.65988 -11.45011 -11.43485 -11.04674 -10.74731 -10.56294 -10.22594 -8.55874 -6.10261 1.44361 1.44772 1.55258 1.72036 2.33662 2.57583 3.21988 3.90965 4.01689 4.12750 4.45695 4.56502 4.62580 4.74914 4.80033 4.86648 4.96409 5.13602 5.23202 5.36129 5.48211 5.54871 5.68040 5.75878 5.78579 6.14687 6.24731 6.72913 7.21403 7.57780 8.81694 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.031390 B = 0.017612 C = 0.013826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.789211 B = 1589.438410 C = 2024.718246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.028 4.028 3 Si 1.071 2.929 4 H -0.298 1.298 5 H -0.284 1.284 6 H -0.232 1.232 7 C -0.539 4.539 8 H 0.015 0.985 9 C 0.019 3.981 10 H 0.016 0.984 11 C -0.119 4.119 12 C -0.108 4.108 13 C -0.101 4.101 14 C -0.095 4.095 15 C -0.061 4.061 16 H 0.122 0.878 17 C 0.475 3.525 18 O -0.535 6.535 19 O -0.516 6.516 20 H 0.247 0.753 21 H 0.046 0.954 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.032 0.968 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.665 -6.899 -4.310 14.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.223 4.223 3 Si 0.895 3.105 4 H -0.224 1.224 5 H -0.211 1.211 6 H -0.156 1.156 7 C -0.577 4.577 8 H 0.033 0.967 9 C 0.000 4.000 10 H 0.034 0.966 11 C -0.157 4.157 12 C -0.146 4.146 13 C -0.139 4.139 14 C -0.133 4.133 15 C -0.080 4.080 16 H 0.140 0.860 17 C 0.318 3.682 18 O -0.423 6.423 19 O -0.329 6.329 20 H 0.055 0.945 21 H 0.065 0.935 22 H 0.091 0.909 23 H 0.085 0.915 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 11.390 -4.973 -4.445 13.200 hybrid contribution -0.782 -1.731 1.251 2.275 sum 10.608 -6.704 -3.194 12.949 Atomic orbital electron populations 1.70965 1.08438 1.28951 1.50964 1.26822 0.96075 1.05752 0.93683 0.83777 0.75036 0.72798 0.78875 1.22431 1.21071 1.15570 1.21798 0.95757 0.94177 1.45943 0.96717 1.19024 0.95234 0.91647 0.94097 0.96590 1.21889 0.99467 0.98871 0.95429 1.21361 0.99267 0.95505 0.98434 1.21428 1.02169 0.96066 0.94189 1.21367 0.98819 0.97283 0.95833 1.21060 1.02730 0.97977 0.86228 0.86047 1.24037 0.72920 0.78421 0.92858 1.90740 1.41219 1.52508 1.57860 1.84505 1.77380 1.36268 1.34771 0.94460 0.93537 0.90929 0.91468 0.94929 0.89562 0.91008 0.89936 0.94763 0.72310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.20 13.70 21.45 0.29 -61.91 15 2 C -0.03 -1.66 5.33 84.65 0.45 -1.21 15 3 Si 1.07 52.61 26.37 68.60 1.81 54.42 15 4 H -0.30 -14.91 7.11 99.48 0.71 -14.20 15 5 H -0.28 -13.78 7.11 99.48 0.71 -13.08 15 6 H -0.23 -9.68 5.61 99.48 0.56 -9.12 15 7 C -0.54 -30.36 5.29 25.60 0.14 -30.23 15 8 H 0.01 0.93 6.52 -2.91 -0.02 0.91 15 9 C 0.02 0.86 1.35 -11.54 -0.02 0.84 15 10 H 0.02 0.76 6.75 -2.39 -0.02 0.75 15 11 C -0.12 -4.59 5.15 30.60 0.16 -4.43 15 12 C -0.11 -3.88 5.70 30.60 0.17 -3.71 15 13 C -0.10 -2.95 5.92 30.59 0.18 -2.76 15 14 C -0.10 -3.24 4.91 30.59 0.15 -3.09 15 15 C -0.06 -2.26 2.39 -11.54 -0.03 -2.29 15 16 H 0.12 3.55 8.14 -2.39 -0.02 3.53 15 17 C 0.47 18.86 7.21 71.24 0.51 19.37 15 18 O -0.54 -26.75 15.52 21.98 0.34 -26.41 15 19 O -0.52 -15.21 13.33 -51.41 -0.69 -15.90 15 20 H 0.25 16.34 8.73 -92.71 -0.81 15.53 15 21 H 0.05 1.94 4.82 -2.39 -0.01 1.93 15 22 H 0.07 2.24 8.14 -2.38 -0.02 2.22 15 23 H 0.07 2.04 8.14 -2.39 -0.02 2.02 15 24 H 0.03 1.45 7.22 -2.39 -0.02 1.43 15 25 H 0.09 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.07 1.85 8.14 -2.39 -0.02 1.84 15 27 H 0.08 2.33 8.11 -2.39 -0.02 2.31 15 28 H 0.03 1.44 6.52 -2.39 -0.02 1.42 15 29 H 0.42 8.72 9.10 -74.06 -0.67 8.05 15 Total: -1.00 -73.57 230.47 3.77 -69.79 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 0.29 Total: 7.51 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 1.72 Total: -27.51 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.29 Total: -61.91 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -0.34 Total: -42.30 kcal Atomic # 14 Polarization: 52.61 SS G_CDS: 1.81 Total: 54.42 kcal Total: -73.57 3.77 -69.79 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233326.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.689 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds