Wall clock time and date at job start Mon Mar 30 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99658 * 2 1 4 4 H 1.48500 * 109.47080 * 239.99558 * 3 2 1 5 5 H 1.48502 * 109.46984 * 119.99405 * 3 2 1 6 6 H 1.48503 * 109.46984 * 359.97438 * 3 2 1 7 7 C 1.37875 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99153 * 175.15127 * 7 2 1 9 9 C 1.50698 * 120.00360 * 355.15664 * 7 2 1 10 10 H 1.08999 * 109.46748 * 35.21683 * 9 7 2 11 11 C 1.53000 * 109.46848 * 275.21305 * 9 7 2 12 12 C 1.53007 * 109.46462 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47228 * 59.99952 * 12 11 9 14 14 C 1.53000 * 109.47320 * 299.99997 * 13 12 11 15 15 C 1.52995 * 109.47161 * 59.99679 * 14 13 12 16 16 H 1.09005 * 109.47158 * 60.00474 * 15 14 13 17 17 C 1.50703 * 109.47143 * 180.02562 * 15 14 13 18 18 O 1.20815 * 120.00553 * 120.00182 * 17 15 14 19 19 O 1.34235 * 119.99620 * 299.99848 * 17 15 14 20 20 H 0.97000 * 119.99685 * 185.16739 * 1 2 3 21 21 H 1.08996 * 109.47261 * 299.99804 * 11 9 7 22 22 H 1.08994 * 109.47015 * 60.00241 * 11 9 7 23 23 H 1.09001 * 109.46679 * 180.02562 * 12 11 9 24 24 H 1.08996 * 109.47317 * 299.99886 * 12 11 9 25 25 H 1.09009 * 109.46918 * 60.00077 * 13 12 11 26 26 H 1.08998 * 109.47256 * 179.97438 * 13 12 11 27 27 H 1.09002 * 109.46786 * 180.02562 * 14 13 12 28 28 H 1.09005 * 109.46697 * 299.99870 * 14 13 12 29 29 H 0.96696 * 117.00057 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 3.1027 1.6966 1.2126 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1956 -0.0785 9 6 1.2552 -2.4968 0.1113 10 1 0.3054 -2.4156 -0.4172 11 6 0.9933 -2.8107 1.5857 12 6 0.2319 -4.1331 1.6980 13 6 1.0657 -5.2560 1.0777 14 6 1.3277 -4.9420 -0.3966 15 6 2.0890 -3.6197 -0.5090 16 1 3.0389 -3.7013 0.0194 17 6 2.3464 -3.3101 -1.9612 18 8 1.9083 -2.2956 -2.4496 19 8 3.0627 -4.1615 -2.7122 20 1 -0.4850 -0.8367 0.0757 21 1 1.9432 -2.8918 2.1141 22 1 0.3990 -2.0109 2.0274 23 1 0.0450 -4.3565 2.7484 24 1 -0.7179 -4.0515 1.1697 25 1 2.0156 -5.3376 1.6062 26 1 0.5235 -6.1981 1.1582 27 1 1.9213 -5.7422 -0.8386 28 1 0.3777 -4.8604 -0.9250 29 1 3.2012 -3.9203 -3.6383 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233329.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:46 Heat of formation + Delta-G solvation = -121.844368 kcal Electronic energy + Delta-G solvation = -13283.683362 eV Core-core repulsion = 10977.498641 eV Total energy + Delta-G solvation = -2306.184721 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.69094 -37.34412 -35.23977 -32.96685 -30.56881 -29.41768 -24.62433 -23.27449 -21.44454 -20.35705 -18.97925 -17.12172 -16.78097 -15.79183 -14.80805 -13.96296 -13.69634 -13.59961 -13.42039 -12.95540 -11.97866 -11.84464 -11.47400 -11.25177 -10.78957 -10.70430 -10.53675 -10.26197 -10.17947 -10.00526 -9.76368 -9.41510 -9.18991 -8.32939 -8.15306 -6.20529 -3.87119 3.16844 3.50298 3.54244 3.71237 3.84425 4.64912 5.30952 5.35231 5.39273 5.56620 5.88369 5.96899 6.08152 6.13732 6.23215 6.31150 6.42604 6.48309 6.65353 6.72201 6.94150 7.06655 7.22508 7.43992 7.63151 8.27977 8.54093 8.80819 9.01387 9.81753 11.19598 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.032325 B = 0.015425 C = 0.011476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.989759 B = 1814.786202 C = 2439.370880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 1.063 2.937 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.577 4.577 8 H 0.041 0.959 9 C 0.046 3.954 10 H 0.040 0.960 11 C -0.107 4.107 12 C -0.125 4.125 13 C -0.111 4.111 14 C -0.111 4.111 15 C -0.061 4.061 16 H 0.090 0.910 17 C 0.470 3.530 18 O -0.473 6.473 19 O -0.537 6.537 20 H 0.268 0.732 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.355 -9.317 0.068 9.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.178 4.178 3 Si 0.892 3.108 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.615 4.615 8 H 0.060 0.940 9 C 0.027 3.973 10 H 0.058 0.942 11 C -0.145 4.145 12 C -0.163 4.163 13 C -0.148 4.148 14 C -0.148 4.148 15 C -0.080 4.080 16 H 0.108 0.892 17 C 0.310 3.690 18 O -0.356 6.356 19 O -0.350 6.350 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 2.948 -7.454 0.281 8.020 hybrid contribution 0.422 -1.481 -0.615 1.658 sum 3.370 -8.935 -0.333 9.555 Atomic orbital electron populations 1.70771 1.06779 1.30761 1.46708 1.25595 0.96479 1.02192 0.93495 0.83638 0.75005 0.75884 0.76245 1.21722 1.21635 1.20900 1.21664 0.93773 0.91453 1.54621 0.94038 1.18807 0.95827 0.91767 0.90911 0.94219 1.21742 0.98577 0.94304 0.99907 1.21684 0.99023 0.96488 0.99094 1.21468 1.00090 0.97923 0.95368 1.21542 1.00099 0.95991 0.97191 1.21182 1.01615 0.97751 0.87440 0.89215 1.23769 0.74688 0.80650 0.89904 1.90759 1.46708 1.25252 1.72885 1.84591 1.69963 1.53265 1.27160 0.92042 0.93414 0.92335 0.93298 0.92670 0.92216 0.92703 0.91987 0.92191 0.74968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.21 13.63 55.43 0.76 -27.45 15 2 C 0.03 0.77 5.45 -17.82 -0.10 0.68 15 3 Si 1.06 26.33 29.91 -169.99 -5.08 21.25 15 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -7.02 7.11 56.52 0.40 -6.61 15 7 C -0.58 -16.27 6.50 -34.44 -0.22 -16.50 15 8 H 0.04 1.18 7.81 -52.49 -0.41 0.77 15 9 C 0.05 1.12 1.01 -91.77 -0.09 1.03 15 10 H 0.04 1.09 6.63 -51.93 -0.34 0.75 15 11 C -0.11 -2.32 5.19 -26.73 -0.14 -2.46 15 12 C -0.13 -2.19 5.92 -26.73 -0.16 -2.35 15 13 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 15 14 C -0.11 -1.87 5.13 -26.73 -0.14 -2.01 15 15 C -0.06 -1.25 2.15 -91.77 -0.20 -1.45 15 16 H 0.09 1.80 8.14 -51.93 -0.42 1.38 15 17 C 0.47 10.08 7.35 36.01 0.26 10.35 15 18 O -0.47 -12.27 15.55 -18.74 -0.29 -12.56 15 19 O -0.54 -9.01 13.33 -39.27 -0.52 -9.53 15 20 H 0.27 8.21 6.66 -40.82 -0.27 7.94 15 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.06 1.39 8.14 -51.93 -0.42 0.97 15 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 15 25 H 0.06 0.88 8.14 -51.92 -0.42 0.45 15 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 27 H 0.06 0.93 8.12 -51.93 -0.42 0.51 15 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 29 H 0.39 4.86 9.10 45.56 0.41 5.27 15 LS Contribution 241.81 15.07 3.64 3.64 Total: -1.00 -32.79 241.81 -5.65 -38.44 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -3.21 Total: 0.80 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.94 Total: -14.58 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.76 Total: -27.45 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.81 Total: -22.09 kcal Atomic # 14 Polarization: 26.33 SS G_CDS: -5.08 Total: 21.25 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.79 -5.65 -38.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233329.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.406 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds