Wall clock time and date at job start Mon Mar 30 2020 02:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99658 * 2 1 4 4 H 1.48500 * 109.47080 * 239.99558 * 3 2 1 5 5 H 1.48502 * 109.46984 * 119.99405 * 3 2 1 6 6 H 1.48503 * 109.46984 * 359.97438 * 3 2 1 7 7 C 1.37875 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99153 * 175.15127 * 7 2 1 9 9 C 1.50698 * 120.00360 * 355.15664 * 7 2 1 10 10 H 1.08999 * 109.46748 * 35.21683 * 9 7 2 11 11 C 1.53000 * 109.46848 * 275.21305 * 9 7 2 12 12 C 1.53007 * 109.46462 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.47228 * 59.99952 * 12 11 9 14 14 C 1.53000 * 109.47320 * 299.99997 * 13 12 11 15 15 C 1.52995 * 109.47161 * 59.99679 * 14 13 12 16 16 H 1.09005 * 109.47158 * 60.00474 * 15 14 13 17 17 C 1.50703 * 109.47143 * 180.02562 * 15 14 13 18 18 O 1.20815 * 120.00553 * 120.00182 * 17 15 14 19 19 O 1.34235 * 119.99620 * 299.99848 * 17 15 14 20 20 H 0.97000 * 119.99685 * 185.16739 * 1 2 3 21 21 H 1.08996 * 109.47261 * 299.99804 * 11 9 7 22 22 H 1.08994 * 109.47015 * 60.00241 * 11 9 7 23 23 H 1.09001 * 109.46679 * 180.02562 * 12 11 9 24 24 H 1.08996 * 109.47317 * 299.99886 * 12 11 9 25 25 H 1.09009 * 109.46918 * 60.00077 * 13 12 11 26 26 H 1.08998 * 109.47256 * 179.97438 * 13 12 11 27 27 H 1.09002 * 109.46786 * 180.02562 * 14 13 12 28 28 H 1.09005 * 109.46697 * 299.99870 * 14 13 12 29 29 H 0.96696 * 117.00057 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 3.1027 1.6966 1.2126 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1956 -0.0785 9 6 1.2552 -2.4968 0.1113 10 1 0.3054 -2.4156 -0.4172 11 6 0.9933 -2.8107 1.5857 12 6 0.2319 -4.1331 1.6980 13 6 1.0657 -5.2560 1.0777 14 6 1.3277 -4.9420 -0.3966 15 6 2.0890 -3.6197 -0.5090 16 1 3.0389 -3.7013 0.0194 17 6 2.3464 -3.3101 -1.9612 18 8 1.9083 -2.2956 -2.4496 19 8 3.0627 -4.1615 -2.7122 20 1 -0.4850 -0.8367 0.0757 21 1 1.9432 -2.8918 2.1141 22 1 0.3990 -2.0109 2.0274 23 1 0.0450 -4.3565 2.7484 24 1 -0.7179 -4.0515 1.1697 25 1 2.0156 -5.3376 1.6062 26 1 0.5235 -6.1981 1.1582 27 1 1.9213 -5.7422 -0.8386 28 1 0.3777 -4.8604 -0.9250 29 1 3.2012 -3.9203 -3.6383 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233329.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:46 Heat of formation + Delta-G solvation = -144.115706 kcal Electronic energy + Delta-G solvation = -13284.649120 eV Core-core repulsion = 10977.498641 eV Total energy + Delta-G solvation = -2307.150478 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.36976 -38.94102 -36.87545 -34.98810 -32.14332 -31.18115 -26.61214 -24.95430 -23.15374 -21.88893 -20.61181 -18.89806 -18.70308 -17.44581 -16.46525 -15.71170 -15.53089 -15.40906 -14.86473 -14.47842 -13.72747 -13.53081 -13.14535 -13.00825 -12.59321 -12.39539 -12.15611 -12.00851 -11.87415 -11.71031 -11.41874 -11.18574 -10.90011 -10.38409 -10.27910 -8.50439 -6.15233 1.46905 1.49024 1.57596 1.75062 2.32828 2.60830 3.30666 3.87791 3.95982 4.06303 4.37078 4.46308 4.56810 4.66074 4.80023 4.83537 4.94531 5.08987 5.21434 5.27869 5.33755 5.41911 5.60721 5.76850 5.77154 6.12009 6.31943 6.74525 7.24517 7.60323 8.90338 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.032325 B = 0.015425 C = 0.011476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.989759 B = 1814.786202 C = 2439.370880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.031 4.031 3 Si 1.103 2.897 4 H -0.285 1.285 5 H -0.265 1.265 6 H -0.285 1.285 7 C -0.577 4.577 8 H 0.033 0.967 9 C 0.042 3.958 10 H 0.000 1.000 11 C -0.100 4.100 12 C -0.120 4.120 13 C -0.105 4.105 14 C -0.104 4.104 15 C -0.064 4.064 16 H 0.102 0.898 17 C 0.476 3.524 18 O -0.531 6.531 19 O -0.516 6.516 20 H 0.255 0.745 21 H 0.055 0.945 22 H 0.023 0.977 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.049 0.951 29 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 -11.303 0.581 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.228 4.228 3 Si 0.926 3.074 4 H -0.211 1.211 5 H -0.190 1.190 6 H -0.211 1.211 7 C -0.616 4.616 8 H 0.051 0.949 9 C 0.023 3.977 10 H 0.018 0.982 11 C -0.139 4.139 12 C -0.158 4.158 13 C -0.142 4.142 14 C -0.141 4.141 15 C -0.083 4.083 16 H 0.120 0.880 17 C 0.318 3.682 18 O -0.418 6.418 19 O -0.329 6.329 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.042 0.958 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.068 0.932 29 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 4.324 -9.491 0.789 10.459 hybrid contribution 0.063 -0.941 -0.843 1.266 sum 4.386 -10.432 -0.055 11.317 Atomic orbital electron populations 1.70880 1.07733 1.30032 1.49666 1.26899 0.96644 1.05891 0.93392 0.83132 0.74342 0.72509 0.77393 1.21130 1.18964 1.21105 1.22038 0.93524 0.93289 1.52718 0.94852 1.18738 0.94167 0.92115 0.92641 0.98223 1.21554 0.99009 0.95903 0.97400 1.21627 0.98304 0.94867 1.00978 1.21476 1.00833 0.98142 0.93732 1.21547 0.99446 0.94309 0.98834 1.21141 1.01896 0.98318 0.86954 0.88016 1.23929 0.73810 0.79957 0.90489 1.90752 1.49198 1.27772 1.74105 1.84505 1.68261 1.51452 1.28716 0.93415 0.92662 0.95774 0.90742 0.93736 0.90645 0.89216 0.89017 0.93212 0.72331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.61 13.63 21.45 0.29 -60.31 15 2 C -0.03 -1.87 5.45 84.65 0.46 -1.40 15 3 Si 1.10 53.72 29.91 68.60 2.05 55.77 15 4 H -0.29 -13.50 7.11 99.48 0.71 -12.79 15 5 H -0.26 -11.69 7.11 99.48 0.71 -10.99 15 6 H -0.29 -13.89 7.11 99.48 0.71 -13.18 15 7 C -0.58 -33.19 6.50 25.60 0.17 -33.02 15 8 H 0.03 1.92 7.81 -2.91 -0.02 1.89 15 9 C 0.04 2.10 1.01 -11.54 -0.01 2.09 15 10 H 0.00 -0.03 6.63 -2.39 -0.02 -0.04 15 11 C -0.10 -4.35 5.19 30.60 0.16 -4.19 15 12 C -0.12 -3.96 5.92 30.60 0.18 -3.78 15 13 C -0.10 -2.78 5.92 30.59 0.18 -2.60 15 14 C -0.10 -3.19 5.13 30.59 0.16 -3.04 15 15 C -0.06 -2.56 2.15 -11.54 -0.02 -2.58 15 16 H 0.10 3.83 8.14 -2.38 -0.02 3.81 15 17 C 0.48 19.96 7.35 71.24 0.52 20.49 15 18 O -0.53 -27.97 15.55 22.00 0.34 -27.63 15 19 O -0.52 -15.87 13.33 -51.46 -0.69 -16.56 15 20 H 0.26 16.52 6.66 -92.71 -0.62 15.91 15 21 H 0.05 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.02 1.17 8.14 -2.39 -0.02 1.15 15 23 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 25 H 0.07 1.82 8.14 -2.38 -0.02 1.81 15 26 H 0.09 1.86 8.14 -2.39 -0.02 1.84 15 27 H 0.09 2.32 8.12 -2.39 -0.02 2.30 15 28 H 0.05 1.63 8.14 -2.38 -0.02 1.61 15 29 H 0.42 9.14 9.10 -74.06 -0.67 8.46 15 Total: -1.00 -73.54 241.81 4.41 -69.13 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.62 Total: 7.63 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 1.79 Total: -28.03 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.29 Total: -60.31 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -0.34 Total: -44.19 kcal Atomic # 14 Polarization: 53.72 SS G_CDS: 2.05 Total: 55.77 kcal Total: -73.54 4.41 -69.13 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233329.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.982 kcal (2) G-P(sol) polarization free energy of solvation -73.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds