Wall clock time and date at job start Mon Mar 30 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00022 * 2 1 4 4 H 1.48501 * 109.47247 * 274.95087 * 3 2 1 5 5 H 1.48503 * 109.47175 * 34.95410 * 3 2 1 6 6 H 1.48508 * 109.47209 * 154.95403 * 3 2 1 7 7 C 1.37884 * 120.00134 * 180.27756 * 2 1 3 8 8 H 1.08001 * 119.99865 * 354.57148 * 7 2 1 9 9 C 1.50697 * 120.00199 * 174.56793 * 7 2 1 10 10 H 1.09003 * 109.47014 * 335.20771 * 9 7 2 11 11 C 1.53001 * 109.47131 * 95.20855 * 9 7 2 12 12 C 1.53003 * 109.46794 * 60.00343 * 11 9 7 13 13 C 1.52999 * 109.47468 * 59.99806 * 12 11 9 14 14 C 1.53001 * 109.46826 * 300.00401 * 13 12 11 15 15 C 1.52995 * 109.47823 * 59.99772 * 14 13 12 16 16 H 1.09002 * 109.46809 * 59.99564 * 15 14 13 17 17 C 1.50695 * 109.47318 * 179.97438 * 15 14 13 18 18 O 1.20823 * 120.00077 * 120.00526 * 17 15 14 19 19 O 1.34229 * 119.99713 * 299.99662 * 17 15 14 20 20 H 0.96995 * 120.00488 * 359.72080 * 1 2 3 21 21 H 1.08994 * 109.46845 * 180.02562 * 11 9 7 22 22 H 1.08998 * 109.47145 * 300.00315 * 11 9 7 23 23 H 1.09002 * 109.46912 * 179.97438 * 12 11 9 24 24 H 1.09002 * 109.46845 * 300.00055 * 12 11 9 25 25 H 1.09003 * 109.46908 * 59.99718 * 13 12 11 26 26 H 1.08995 * 109.47203 * 179.97438 * 13 12 11 27 27 H 1.09000 * 109.46982 * 180.02562 * 14 13 12 28 28 H 1.09003 * 109.46820 * 299.99371 * 14 13 12 29 29 H 0.96709 * 116.99808 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3919 2.1068 -1.3948 5 1 1.5028 2.6202 0.8021 6 1 3.5951 1.4122 0.5927 7 6 2.0045 -1.1941 -0.0058 8 1 1.4682 -2.1277 0.0782 9 6 3.5064 -1.1964 -0.1293 10 1 3.8314 -0.2832 -0.6279 11 6 4.1327 -1.2670 1.2648 12 6 3.6766 -2.5489 1.9645 13 6 4.1189 -3.7626 1.1446 14 6 3.4927 -3.6919 -0.2496 15 6 3.9488 -2.4100 -0.9493 16 1 5.0351 -2.4117 -1.0386 17 6 3.3324 -2.3408 -2.3227 18 8 2.6128 -1.4156 -2.6160 19 8 3.5830 -3.3069 -3.2202 20 1 -0.4850 0.8400 0.0041 21 1 5.2190 -1.2682 1.1754 22 1 3.8175 -0.4024 1.8489 23 1 4.1231 -2.5995 2.9575 24 1 2.5902 -2.5472 2.0538 25 1 5.2053 -3.7643 1.0552 26 1 3.7944 -4.6758 1.6433 27 1 3.8074 -4.5568 -0.8336 28 1 2.4063 -3.6902 -0.1602 29 1 3.1654 -3.2190 -4.0881 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084233342.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:51 Heat of formation + Delta-G solvation = -111.910506 kcal Electronic energy + Delta-G solvation = -13436.898112 eV Core-core repulsion = 11131.144156 eV Total energy + Delta-G solvation = -2305.753956 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.69395 -37.38466 -35.19429 -32.36589 -30.46635 -30.03806 -25.22843 -23.07627 -21.50611 -20.40690 -18.61124 -17.07876 -16.23615 -15.89481 -14.82284 -14.29822 -13.93322 -13.40365 -13.11690 -12.46488 -12.28183 -11.82998 -11.67422 -11.53472 -10.82865 -10.65108 -10.46550 -10.26930 -10.07077 -9.77202 -9.60640 -9.30093 -9.12581 -8.70818 -8.33751 -5.91852 -3.86998 3.19609 3.40707 3.47352 3.48943 3.88080 4.57958 5.34543 5.46503 5.51241 5.66920 5.94789 6.10928 6.17790 6.24259 6.33243 6.37350 6.40839 6.56956 6.77733 6.88529 7.03567 7.17346 7.23209 7.29746 7.40690 7.89581 8.60992 8.83972 9.08680 9.73976 11.22024 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.018578 C = 0.013916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.068587 B = 1506.764659 C = 2011.583852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.080 3.920 3 Si 0.872 3.128 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.264 1.264 7 C -0.490 4.490 8 H 0.073 0.927 9 C 0.023 3.977 10 H 0.036 0.964 11 C -0.108 4.108 12 C -0.111 4.111 13 C -0.109 4.109 14 C -0.103 4.103 15 C -0.058 4.058 16 H 0.078 0.922 17 C 0.470 3.530 18 O -0.473 6.473 19 O -0.536 6.536 20 H 0.260 0.740 21 H 0.030 0.970 22 H 0.056 0.944 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.910 -5.828 -0.673 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.121 4.121 3 Si 0.700 3.300 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.189 1.189 7 C -0.527 4.527 8 H 0.091 0.909 9 C 0.004 3.996 10 H 0.054 0.946 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.141 4.141 15 C -0.077 4.077 16 H 0.096 0.904 17 C 0.310 3.690 18 O -0.356 6.356 19 O -0.349 6.349 20 H 0.069 0.931 21 H 0.049 0.951 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 8.714 -5.457 -0.355 10.288 hybrid contribution 0.054 1.063 -0.688 1.267 sum 8.767 -4.394 -1.043 9.862 Atomic orbital electron populations 1.69897 1.06315 1.26504 1.51493 1.24884 0.94446 0.98638 0.94105 0.86955 0.80490 0.84430 0.78141 1.20590 1.21945 1.18863 1.20711 0.88194 0.94310 1.49501 0.90864 1.19105 0.97985 0.91714 0.90785 0.94562 1.21728 0.96817 0.97346 0.98748 1.21437 1.02718 0.94276 0.96441 1.21445 0.99302 0.98248 0.95668 1.21434 1.02525 0.94691 0.95438 1.21053 0.98592 1.00255 0.87838 0.90371 1.23720 0.79263 0.79054 0.86990 1.90768 1.33016 1.33697 1.78115 1.84577 1.71307 1.51976 1.27031 0.93061 0.95108 0.92563 0.94053 0.90286 0.93056 0.92746 0.92688 0.90248 0.74877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.96 55.43 0.77 -27.47 15 2 C 0.08 2.35 5.47 -17.82 -0.10 2.25 15 3 Si 0.87 22.46 26.58 -169.99 -4.52 17.94 15 4 H -0.28 -7.39 7.11 56.52 0.40 -6.99 15 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 15 6 H -0.26 -6.34 6.09 56.52 0.34 -5.99 15 7 C -0.49 -13.38 5.50 -34.44 -0.19 -13.57 15 8 H 0.07 2.16 6.26 -52.49 -0.33 1.83 15 9 C 0.02 0.53 1.31 -91.77 -0.12 0.41 15 10 H 0.04 0.89 5.55 -51.93 -0.29 0.60 15 11 C -0.11 -2.19 5.21 -26.73 -0.14 -2.33 15 12 C -0.11 -2.02 5.70 -26.73 -0.15 -2.17 15 13 C -0.11 -1.74 5.92 -26.73 -0.16 -1.90 15 14 C -0.10 -1.85 4.91 -26.73 -0.13 -1.98 15 15 C -0.06 -1.15 2.41 -91.78 -0.22 -1.37 15 16 H 0.08 1.35 8.14 -51.93 -0.42 0.93 15 17 C 0.47 9.80 7.35 36.00 0.26 10.06 15 18 O -0.47 -11.99 15.55 -18.75 -0.29 -12.28 15 19 O -0.54 -8.83 13.33 -39.26 -0.52 -9.36 15 20 H 0.26 7.71 8.31 -40.82 -0.34 7.37 15 21 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 22 H 0.06 1.20 7.14 -51.93 -0.37 0.83 15 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 15 24 H 0.08 1.63 7.17 -51.93 -0.37 1.26 15 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.05 0.78 8.14 -51.93 -0.42 0.35 15 27 H 0.05 0.87 8.11 -51.93 -0.42 0.45 15 28 H 0.08 1.63 6.30 -51.93 -0.33 1.30 15 29 H 0.39 4.82 9.10 45.56 0.41 5.23 15 LS Contribution 232.17 15.07 3.50 3.50 Total: -1.00 -32.50 232.17 -5.00 -37.50 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -3.00 Total: 0.76 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.95 Total: -10.59 kcal Atomic # 7 Polarization: -28.25 SS G_CDS: 0.77 Total: -27.47 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.81 Total: -21.63 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.52 Total: 17.94 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.50 -5.00 -37.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233342.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.409 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds