Wall clock time and date at job start Mon Mar 30 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00022 * 2 1 4 4 H 1.48501 * 109.47247 * 274.95087 * 3 2 1 5 5 H 1.48503 * 109.47175 * 34.95410 * 3 2 1 6 6 H 1.48508 * 109.47209 * 154.95403 * 3 2 1 7 7 C 1.37884 * 120.00134 * 180.27756 * 2 1 3 8 8 H 1.08001 * 119.99865 * 354.57148 * 7 2 1 9 9 C 1.50697 * 120.00199 * 174.56793 * 7 2 1 10 10 H 1.09003 * 109.47014 * 335.20771 * 9 7 2 11 11 C 1.53001 * 109.47131 * 95.20855 * 9 7 2 12 12 C 1.53003 * 109.46794 * 60.00343 * 11 9 7 13 13 C 1.52999 * 109.47468 * 59.99806 * 12 11 9 14 14 C 1.53001 * 109.46826 * 300.00401 * 13 12 11 15 15 C 1.52995 * 109.47823 * 59.99772 * 14 13 12 16 16 H 1.09002 * 109.46809 * 59.99564 * 15 14 13 17 17 C 1.50695 * 109.47318 * 179.97438 * 15 14 13 18 18 O 1.20823 * 120.00077 * 120.00526 * 17 15 14 19 19 O 1.34229 * 119.99713 * 299.99662 * 17 15 14 20 20 H 0.96995 * 120.00488 * 359.72080 * 1 2 3 21 21 H 1.08994 * 109.46845 * 180.02562 * 11 9 7 22 22 H 1.08998 * 109.47145 * 300.00315 * 11 9 7 23 23 H 1.09002 * 109.46912 * 179.97438 * 12 11 9 24 24 H 1.09002 * 109.46845 * 300.00055 * 12 11 9 25 25 H 1.09003 * 109.46908 * 59.99718 * 13 12 11 26 26 H 1.08995 * 109.47203 * 179.97438 * 13 12 11 27 27 H 1.09000 * 109.46982 * 180.02562 * 14 13 12 28 28 H 1.09003 * 109.46820 * 299.99371 * 14 13 12 29 29 H 0.96709 * 116.99808 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3919 2.1068 -1.3948 5 1 1.5028 2.6202 0.8021 6 1 3.5951 1.4122 0.5927 7 6 2.0045 -1.1941 -0.0058 8 1 1.4682 -2.1277 0.0782 9 6 3.5064 -1.1964 -0.1293 10 1 3.8314 -0.2832 -0.6279 11 6 4.1327 -1.2670 1.2648 12 6 3.6766 -2.5489 1.9645 13 6 4.1189 -3.7626 1.1446 14 6 3.4927 -3.6919 -0.2496 15 6 3.9488 -2.4100 -0.9493 16 1 5.0351 -2.4117 -1.0386 17 6 3.3324 -2.3408 -2.3227 18 8 2.6128 -1.4156 -2.6160 19 8 3.5830 -3.3069 -3.2202 20 1 -0.4850 0.8400 0.0041 21 1 5.2190 -1.2682 1.1754 22 1 3.8175 -0.4024 1.8489 23 1 4.1231 -2.5995 2.9575 24 1 2.5902 -2.5472 2.0538 25 1 5.2053 -3.7643 1.0552 26 1 3.7944 -4.6758 1.6433 27 1 3.8074 -4.5568 -0.8336 28 1 2.4063 -3.6902 -0.1602 29 1 3.1654 -3.2190 -4.0881 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084233342.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:51 Heat of formation + Delta-G solvation = -135.191270 kcal Electronic energy + Delta-G solvation = -13437.907641 eV Core-core repulsion = 11131.144156 eV Total energy + Delta-G solvation = -2306.763486 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.32101 -38.94618 -36.78895 -34.44529 -32.00855 -31.72150 -27.16963 -24.71918 -23.06462 -21.88998 -20.44781 -18.66207 -18.18205 -17.50147 -16.45936 -16.17336 -15.65520 -14.91826 -14.80084 -14.25412 -13.96532 -13.52940 -13.26244 -13.10883 -12.75081 -12.29580 -12.07961 -11.95471 -11.74793 -11.56622 -11.37992 -10.95391 -10.72414 -10.57918 -10.48266 -8.15378 -6.10337 1.33302 1.36788 1.44001 1.56369 2.42475 2.44321 3.24268 3.97706 4.06615 4.20868 4.50687 4.60746 4.66660 4.81523 4.85835 4.91516 4.97978 5.18490 5.25917 5.42558 5.51498 5.54796 5.69752 5.77066 5.85254 5.92776 6.40705 6.89355 7.31738 7.52202 9.02463 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.029652 B = 0.018578 C = 0.013916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.068587 B = 1506.764659 C = 2011.583852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C 0.012 3.988 3 Si 0.924 3.076 4 H -0.292 1.292 5 H -0.293 1.293 6 H -0.232 1.232 7 C -0.463 4.463 8 H 0.038 0.962 9 C 0.015 3.985 10 H 0.022 0.978 11 C -0.108 4.108 12 C -0.111 4.111 13 C -0.103 4.103 14 C -0.099 4.099 15 C -0.062 4.062 16 H 0.120 0.880 17 C 0.473 3.527 18 O -0.531 6.531 19 O -0.518 6.518 20 H 0.256 0.744 21 H 0.069 0.931 22 H 0.038 0.962 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.185 -7.016 -0.296 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.183 4.183 3 Si 0.751 3.249 4 H -0.219 1.219 5 H -0.220 1.220 6 H -0.155 1.155 7 C -0.501 4.501 8 H 0.056 0.944 9 C -0.004 4.004 10 H 0.040 0.960 11 C -0.146 4.146 12 C -0.149 4.149 13 C -0.140 4.140 14 C -0.137 4.137 15 C -0.081 4.081 16 H 0.138 0.862 17 C 0.316 3.684 18 O -0.419 6.419 19 O -0.331 6.331 20 H 0.065 0.935 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.089 0.911 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.058 0.942 29 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 12.036 -6.688 0.018 13.769 hybrid contribution -0.950 1.275 -0.882 1.818 sum 11.086 -5.412 -0.864 12.367 Atomic orbital electron populations 1.70054 1.08139 1.26927 1.55114 1.25689 0.95098 1.02344 0.95167 0.86095 0.80854 0.80512 0.77453 1.21889 1.21973 1.15468 1.20967 0.90836 0.92381 1.45880 0.94393 1.19150 0.94907 0.92983 0.93355 0.96005 1.21665 0.98886 0.97785 0.96227 1.21410 1.00439 0.94592 0.98418 1.21444 1.01034 0.97821 0.93676 1.21414 1.00261 0.94694 0.97304 1.21109 1.00846 0.99375 0.86801 0.86213 1.24033 0.78016 0.78528 0.87853 1.90766 1.35709 1.36106 1.79327 1.84497 1.70780 1.49937 1.27885 0.93544 0.91250 0.94304 0.91128 0.94252 0.89752 0.90738 0.89911 0.94179 0.72459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.98 13.96 21.45 0.30 -62.68 15 2 C 0.01 0.71 5.47 84.66 0.46 1.18 15 3 Si 0.92 47.13 26.58 68.60 1.82 48.95 15 4 H -0.29 -15.34 7.11 99.48 0.71 -14.63 15 5 H -0.29 -14.76 7.11 99.48 0.71 -14.06 15 6 H -0.23 -10.46 6.09 99.48 0.61 -9.85 15 7 C -0.46 -25.87 5.50 25.60 0.14 -25.73 15 8 H 0.04 2.35 6.26 -2.91 -0.02 2.33 15 9 C 0.02 0.67 1.31 -11.54 -0.02 0.66 15 10 H 0.02 1.03 5.55 -2.39 -0.01 1.02 15 11 C -0.11 -4.01 5.21 30.60 0.16 -3.86 15 12 C -0.11 -3.72 5.70 30.60 0.17 -3.54 15 13 C -0.10 -2.81 5.92 30.59 0.18 -2.63 15 14 C -0.10 -3.27 4.91 30.59 0.15 -3.12 15 15 C -0.06 -2.28 2.41 -11.54 -0.03 -2.31 15 16 H 0.12 3.47 8.14 -2.39 -0.02 3.45 15 17 C 0.47 19.03 7.35 71.23 0.52 19.55 15 18 O -0.53 -27.17 15.55 21.97 0.34 -26.83 15 19 O -0.52 -15.58 13.33 -51.41 -0.69 -16.27 15 20 H 0.26 16.02 8.31 -92.71 -0.77 15.24 15 21 H 0.07 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.04 1.56 7.14 -2.39 -0.02 1.54 15 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 24 H 0.04 1.61 7.17 -2.39 -0.02 1.59 15 25 H 0.08 1.85 8.14 -2.39 -0.02 1.83 15 26 H 0.07 1.79 8.14 -2.39 -0.02 1.77 15 27 H 0.08 2.28 8.11 -2.39 -0.02 2.26 15 28 H 0.04 1.63 6.30 -2.39 -0.02 1.61 15 29 H 0.42 9.12 9.10 -74.05 -0.67 8.45 15 Total: -1.00 -73.96 232.17 3.91 -70.06 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.38 Total: 6.57 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 1.75 Total: -19.80 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.30 Total: -62.68 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.34 Total: -43.10 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 1.82 Total: 48.95 kcal Total: -73.96 3.91 -70.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084233342.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.135 kcal (2) G-P(sol) polarization free energy of solvation -73.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds