Wall clock time and date at job start Mon Mar 30 2020 01:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.54673 * 2 1 4 4 N 1.47068 * 109.50838 * 239.88696 * 2 1 3 5 5 C 1.47069 * 110.36483 * 183.11103 * 4 2 1 6 6 C 1.50650 * 109.24864 * 56.95550 * 5 4 2 7 7 O 1.21223 * 119.67691 * 151.16285 * 6 5 4 8 8 N 1.34451 * 120.65260 * 331.17246 * 6 5 4 9 9 C 1.37495 * 119.31988 * 180.49315 * 8 6 5 10 10 H 1.08006 * 119.99579 * 317.78913 * 9 8 6 11 11 C 1.38921 * 120.00450 * 137.79244 * 9 8 6 12 12 N 1.31353 * 119.99929 * 340.32067 * 11 9 8 13 13 Si 1.86799 * 120.00174 * 160.31947 * 11 9 8 14 14 H 1.48496 * 109.47097 * 94.76207 * 13 11 9 15 15 H 1.48493 * 109.47341 * 214.76678 * 13 11 9 16 16 H 1.48503 * 109.47101 * 334.76579 * 13 11 9 17 17 C 1.34445 * 121.36392 * 0.46141 * 8 6 5 18 18 O 1.21216 * 119.67513 * 179.81137 * 17 8 6 19 19 H 1.09006 * 109.46733 * 299.88106 * 1 2 3 20 20 H 1.09001 * 109.46812 * 59.88152 * 1 2 3 21 21 H 1.09004 * 109.46730 * 179.88686 * 1 2 3 22 22 H 1.00900 * 111.00014 * 306.61183 * 4 2 1 23 23 H 1.08997 * 109.50933 * 176.89098 * 5 4 2 24 24 H 1.09004 * 109.50796 * 296.98104 * 5 4 2 25 25 H 0.96991 * 120.00135 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 7 2.0211 -0.6955 -1.1992 5 6 3.4897 -0.7716 -1.1812 6 6 3.9359 -1.4616 0.0815 7 8 4.9738 -2.0879 0.0885 8 7 3.1942 -1.3898 1.2006 9 6 3.6325 -2.0215 2.3405 10 1 4.0595 -3.0117 2.2789 11 6 3.5262 -1.3863 3.5714 12 7 3.3821 -0.0819 3.6270 13 14 3.5882 -2.3872 5.1474 14 1 4.9784 -2.4037 5.6689 15 1 2.6877 -1.7760 6.1576 16 1 3.1476 -3.7777 4.8684 17 6 2.0332 -0.7125 1.2284 18 8 1.3872 -0.6706 2.2532 19 1 -0.3633 0.5120 0.8911 20 1 -0.3633 0.5157 -0.8889 21 1 -0.3633 -1.0277 -0.0020 22 1 1.6123 -1.6147 -1.2769 23 1 3.8355 -1.3369 -2.0466 24 1 3.9068 0.2350 -1.2136 25 1 3.3075 0.3616 4.4863 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085088296.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:40 Heat of formation + Delta-G solvation = -81.029866 kcal Electronic energy + Delta-G solvation = -13169.754336 eV Core-core repulsion = 10761.799122 eV Total energy + Delta-G solvation = -2407.955214 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.19675 -39.32498 -37.27800 -35.98009 -33.77890 -31.84297 -27.92398 -26.83650 -24.80014 -23.07557 -20.79002 -19.26959 -18.38931 -17.44758 -16.51001 -16.48203 -16.00840 -15.96227 -15.17136 -15.09272 -14.10837 -13.63264 -13.33931 -13.05946 -12.97516 -12.75327 -12.39720 -12.34343 -12.29176 -12.05639 -11.17893 -10.68317 -10.09254 -9.52088 -8.55748 -6.43128 0.92990 1.28876 1.34037 1.44918 2.03015 2.34355 2.60969 2.91959 3.16592 3.26373 4.05796 4.13280 4.21815 4.42125 4.74237 4.91452 4.98244 5.25369 5.29796 5.45938 5.87037 6.03076 6.19180 6.66842 6.94574 7.38558 7.69051 8.55516 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.041500 B = 0.016185 C = 0.012620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.542564 B = 1729.628186 C = 2218.152764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.075 3.925 3 H 0.120 0.880 4 N -0.640 5.640 5 C 0.054 3.946 6 C 0.441 3.559 7 O -0.572 6.572 8 N -0.428 5.428 9 C -0.405 4.405 10 H 0.075 0.925 11 C 0.033 3.967 12 N -0.867 5.867 13 Si 0.986 3.014 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.265 1.265 17 C 0.453 3.547 18 O -0.519 6.519 19 H 0.059 0.941 20 H 0.105 0.895 21 H 0.056 0.944 22 H 0.355 0.645 23 H 0.143 0.857 24 H 0.127 0.873 25 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.089 1.511 -8.303 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.039 4.039 3 H 0.138 0.862 4 N -0.272 5.272 5 C -0.079 4.079 6 C 0.232 3.768 7 O -0.451 6.451 8 N -0.159 5.159 9 C -0.530 4.530 10 H 0.093 0.907 11 C -0.175 4.175 12 N -0.501 5.501 13 Si 0.808 3.192 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.189 1.189 17 C 0.243 3.757 18 O -0.392 6.392 19 H 0.078 0.922 20 H 0.123 0.877 21 H 0.075 0.925 22 H 0.174 0.826 23 H 0.161 0.839 24 H 0.145 0.855 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.976 1.964 -8.057 9.671 hybrid contribution 0.585 -1.059 1.893 2.246 sum -4.391 0.905 -6.164 7.622 Atomic orbital electron populations 1.21579 0.89386 1.03059 1.03732 1.22073 0.99259 0.99141 0.83386 0.86199 1.61077 1.04633 1.25205 1.36263 1.22611 0.88942 1.03398 0.92908 1.23396 0.83762 0.81514 0.88083 1.90519 1.25436 1.42893 1.86204 1.42825 1.18108 1.43994 1.10959 1.19365 1.47316 1.01042 0.85317 0.90704 1.26131 0.92791 0.95914 1.02695 1.69898 1.43013 1.09484 1.27657 0.85081 0.78504 0.78679 0.76961 1.19012 1.19867 1.18893 1.22883 0.80087 0.80488 0.92284 1.90490 1.56152 1.57751 1.34785 0.92167 0.87668 0.92518 0.82625 0.83927 0.85477 0.91830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.23 9.04 71.98 0.65 -2.58 15 2 C 0.07 2.47 3.29 44.12 0.15 2.61 15 3 H 0.12 3.76 8.14 -2.38 -0.02 3.74 15 4 N -0.64 -17.30 6.63 -498.83 -3.31 -20.61 15 5 C 0.05 1.62 6.71 85.51 0.57 2.19 15 6 C 0.44 20.45 7.56 87.69 0.66 21.12 15 7 O -0.57 -30.67 16.91 -2.85 -0.05 -30.72 15 8 N -0.43 -22.64 2.62 -583.52 -1.53 -24.17 15 9 C -0.40 -24.29 8.53 83.97 0.72 -23.57 15 10 H 0.08 4.62 7.81 -2.91 -0.02 4.60 15 11 C 0.03 1.89 4.29 84.93 0.36 2.26 15 12 N -0.87 -51.91 11.62 21.65 0.25 -51.66 15 13 Si 0.99 46.18 29.60 68.60 2.03 48.21 15 14 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 15 H -0.27 -12.42 7.11 99.48 0.71 -11.71 15 16 H -0.26 -12.12 7.11 99.48 0.71 -11.41 15 17 C 0.45 21.79 6.59 87.70 0.58 22.37 15 18 O -0.52 -28.87 13.65 -2.83 -0.04 -28.91 15 19 H 0.06 1.81 7.84 -2.38 -0.02 1.79 15 20 H 0.10 2.07 8.14 -2.39 -0.02 2.05 15 21 H 0.06 1.52 8.14 -2.38 -0.02 1.50 15 22 H 0.35 9.00 8.78 -89.69 -0.79 8.21 15 23 H 0.14 3.42 8.14 -2.39 -0.02 3.40 15 24 H 0.13 3.41 8.14 -2.39 -0.02 3.40 15 25 H 0.27 15.37 8.31 -92.72 -0.77 14.60 15 Total: -1.00 -75.82 221.79 1.47 -74.34 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: 0.42 Total: 9.12 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: 3.69 Total: 24.39 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -4.58 Total: -96.43 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -0.09 Total: -59.63 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -75.82 1.47 -74.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085088296.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.688 kcal (2) G-P(sol) polarization free energy of solvation -75.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds