Wall clock time and date at job start Mon Mar 30 2020 02:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35844 * 117.00399 * 2 1 4 4 N 1.33655 * 125.50662 * 359.97438 * 3 2 1 5 5 C 1.31622 * 109.66160 * 180.02562 * 4 3 2 6 6 N 1.38294 * 126.02452 * 180.02562 * 5 4 3 7 7 N 1.34938 * 107.94670 * 359.97438 * 5 4 3 8 8 C 1.46500 * 126.78320 * 179.97438 * 7 5 4 9 9 C 1.50696 * 109.46944 * 90.00036 * 8 7 5 10 10 H 1.07999 * 120.00202 * 359.97438 * 9 8 7 11 11 C 1.37884 * 119.99746 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99573 * 0.27650 * 11 9 8 13 13 Si 1.86800 * 119.99781 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47364 * 359.97438 * 13 11 9 15 15 H 1.48508 * 109.46883 * 120.00040 * 13 11 9 16 16 H 1.48497 * 109.46870 * 239.99850 * 13 11 9 17 17 N 1.30959 * 125.50720 * 180.27920 * 3 2 1 18 18 H 1.09001 * 109.46931 * 59.99871 * 1 2 3 19 19 H 1.08994 * 109.47612 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.47096 * 300.00304 * 1 2 3 21 21 H 0.97000 * 120.00135 * 179.97438 * 6 5 4 22 22 H 0.96999 * 120.00774 * 359.96405 * 6 5 4 23 23 H 1.09000 * 109.46609 * 330.00218 * 8 7 5 24 24 H 1.08999 * 109.46486 * 210.00297 * 8 7 5 25 25 H 0.97001 * 120.00651 * 359.71956 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 7 1.4289 2.3960 -0.0005 5 6 2.3240 3.3610 -0.0009 6 7 2.0572 4.7179 -0.0009 7 7 3.5480 2.7928 -0.0001 8 6 4.8377 3.4876 -0.0007 9 6 5.2797 3.7275 1.4199 10 1 4.6615 3.3959 2.2411 11 6 6.4728 4.3712 1.6713 12 7 7.2224 4.7807 0.6713 13 14 7.0204 4.6691 3.4322 14 1 6.0032 4.1228 4.3661 15 1 8.3220 3.9937 3.6668 16 1 7.1710 6.1282 3.6636 17 7 3.3410 1.4040 -0.0052 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 2.7878 5.3559 -0.0009 22 1 1.1394 5.0318 -0.0012 23 1 4.7354 4.4429 -0.5156 24 1 5.5796 2.8759 -0.5138 25 1 6.9379 4.6263 -0.2431 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086879597.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:32 Heat of formation + Delta-G solvation = 31.374655 kcal Electronic energy + Delta-G solvation = -12390.171767 eV Core-core repulsion = 10019.383530 eV Total energy + Delta-G solvation = -2370.788237 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.93817 -39.42315 -36.23654 -35.58202 -33.67391 -30.96018 -28.89338 -27.70119 -25.33491 -22.84703 -22.21877 -19.59546 -19.00030 -17.80805 -17.54324 -16.97453 -16.79763 -15.88483 -15.61050 -15.28323 -14.62406 -14.15573 -13.40419 -12.85990 -12.80286 -12.78077 -12.48791 -11.98669 -11.81589 -11.13166 -10.96734 -10.69181 -10.30406 -9.24047 -8.78718 -6.58977 0.92675 1.17256 1.53315 1.59932 1.79018 1.85991 2.01433 2.47682 2.76845 3.00313 3.73048 4.28193 4.42656 4.47163 4.52857 4.71172 4.99224 5.20271 5.51399 5.58352 5.95564 6.02644 6.33120 6.46875 6.61314 7.16934 7.35111 8.57469 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.052496 B = 0.009130 C = 0.008705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.246448 B = 3066.138206 C = 3215.628949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.298 6.298 3 C 0.403 3.597 4 N -0.631 5.631 5 C 0.543 3.457 6 N -0.798 5.798 7 N -0.385 5.385 8 C 0.263 3.737 9 C -0.628 4.628 10 H 0.039 0.961 11 C -0.010 4.010 12 N -0.918 5.918 13 Si 1.124 2.876 14 H -0.284 1.284 15 H -0.278 1.278 16 H -0.266 1.266 17 N -0.369 5.369 18 H 0.061 0.939 19 H 0.137 0.863 20 H 0.057 0.943 21 H 0.422 0.578 22 H 0.432 0.568 23 H 0.056 0.944 24 H 0.023 0.977 25 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.621 -0.361 -0.657 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.200 6.200 3 C 0.085 3.915 4 N -0.384 5.384 5 C 0.177 3.823 6 N -0.357 5.357 7 N -0.183 5.183 8 C 0.143 3.857 9 C -0.666 4.666 10 H 0.058 0.942 11 C -0.211 4.211 12 N -0.553 5.553 13 Si 0.945 3.055 14 H -0.209 1.209 15 H -0.204 1.204 16 H -0.191 1.191 17 N -0.214 5.214 18 H 0.079 0.921 19 H 0.155 0.845 20 H 0.076 0.924 21 H 0.255 0.745 22 H 0.267 0.733 23 H 0.074 0.926 24 H 0.041 0.959 25 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.148 -0.570 0.221 10.167 hybrid contribution -1.235 -0.130 -1.127 1.677 sum -11.383 -0.699 -0.906 11.441 Atomic orbital electron populations 1.23246 0.74186 1.05444 1.02516 1.86123 1.25034 1.18987 1.89901 1.21515 0.88043 0.85858 0.96131 1.70326 1.31186 0.96670 1.40233 1.20108 0.81943 0.88555 0.91726 1.40946 1.13203 0.97824 1.83741 1.49999 1.07096 1.02012 1.59172 1.19387 0.77264 0.90767 0.98303 1.22348 1.09373 1.43278 0.91568 0.94226 1.27190 0.92409 0.92202 1.09310 1.70884 1.39604 1.44606 1.00229 0.82807 0.75814 0.77665 0.69181 1.20942 1.20391 1.19118 1.78083 1.13689 0.92727 1.36892 0.92071 0.84499 0.92429 0.74502 0.73289 0.92615 0.95867 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.02 10.68 113.37 1.21 2.23 15 2 O -0.30 -11.13 10.57 -91.80 -0.97 -12.10 15 3 C 0.40 17.81 8.89 180.56 1.60 19.42 15 4 N -0.63 -25.74 10.62 -314.54 -3.34 -29.08 15 5 C 0.54 22.13 9.09 260.81 2.37 24.51 15 6 N -0.80 -23.61 9.06 -58.89 -0.53 -24.15 15 7 N -0.38 -18.45 3.63 -353.64 -1.28 -19.74 15 8 C 0.26 13.23 5.37 85.63 0.46 13.69 15 9 C -0.63 -34.37 9.39 25.60 0.24 -34.13 15 10 H 0.04 2.30 7.81 -2.91 -0.02 2.27 15 11 C -0.01 -0.55 5.46 84.66 0.46 -0.08 15 12 N -0.92 -51.54 13.65 21.45 0.29 -51.25 15 13 Si 1.12 48.11 29.90 68.60 2.05 50.16 15 14 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 15 H -0.28 -11.66 7.11 99.48 0.71 -10.96 15 16 H -0.27 -10.60 7.11 99.48 0.71 -9.90 15 17 N -0.37 -18.58 12.70 -175.01 -2.22 -20.81 15 18 H 0.06 1.45 8.14 -2.39 -0.02 1.43 15 19 H 0.14 2.24 8.14 -2.39 -0.02 2.23 15 20 H 0.06 1.42 8.14 -2.39 -0.02 1.40 15 21 H 0.42 11.91 8.12 -92.71 -0.75 11.15 15 22 H 0.43 9.59 8.95 -92.71 -0.83 8.76 15 23 H 0.06 2.59 7.40 -2.39 -0.02 2.57 15 24 H 0.02 1.27 8.01 -2.39 -0.02 1.25 15 25 H 0.26 14.63 7.22 -92.71 -0.67 13.96 15 Total: -1.00 -68.39 232.26 0.09 -68.30 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -0.25 Total: 13.03 kcal Atomic # 6 Polarization: 19.28 SS G_CDS: 6.35 Total: 25.62 kcal Atomic # 7 Polarization: -137.93 SS G_CDS: -7.09 Total: -145.02 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: -0.97 Total: -12.10 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.05 Total: 50.16 kcal Total: -68.39 0.09 -68.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086879597.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.675 kcal (2) G-P(sol) polarization free energy of solvation -68.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds