Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.52753 * 2 1 4 4 C 1.51633 * 110.75293 * 237.13120 * 2 1 3 5 5 O 1.21302 * 127.34488 * 61.58938 * 4 2 1 6 6 N 1.34880 * 105.30293 * 241.69898 * 4 2 1 7 7 C 1.36832 * 124.37204 * 179.97438 * 6 4 2 8 8 H 1.08008 * 119.99860 * 8.29493 * 7 6 4 9 9 C 1.38818 * 120.00115 * 188.29475 * 7 6 4 10 10 N 1.31466 * 119.99869 * 194.57287 * 9 7 6 11 11 Si 1.86801 * 120.00019 * 14.84615 * 9 7 6 12 12 H 1.48497 * 109.47146 * 269.72507 * 11 9 7 13 13 H 1.48500 * 109.47046 * 29.72893 * 11 9 7 14 14 H 1.48508 * 109.46991 * 149.72460 * 11 9 7 15 15 N 1.39159 * 111.25550 * 359.66108 * 6 4 2 16 16 C 1.29218 * 112.81689 * 0.23086 * 15 6 4 17 17 O 1.35192 * 126.51201 * 179.97438 * 16 15 6 18 18 H 1.09002 * 109.47056 * 298.65280 * 1 2 3 19 19 H 1.09003 * 109.47167 * 58.64823 * 1 2 3 20 20 H 1.08992 * 109.47322 * 178.65328 * 1 2 3 21 21 H 1.09004 * 109.46971 * 181.34639 * 3 2 1 22 22 H 1.09001 * 109.47086 * 301.34861 * 3 2 1 23 23 H 1.09005 * 109.46936 * 61.34925 * 3 2 1 24 24 H 0.96994 * 120.00521 * 355.06663 * 10 9 7 25 25 H 0.96702 * 114.00794 * 0.02664 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4328 0.0000 4 6 2.0673 -0.7695 -1.1910 5 8 1.8990 -0.5188 -2.3658 6 7 2.7702 -1.7937 -0.6653 7 6 3.4262 -2.7401 -1.4043 8 1 3.5154 -2.6235 -2.4744 9 6 3.9772 -3.8502 -0.7788 10 7 4.8416 -4.6048 -1.4206 11 14 3.4846 -4.2761 0.9720 12 1 4.4038 -3.6008 1.9230 13 1 2.0933 -3.8199 1.2197 14 1 3.5652 -5.7463 1.1651 15 7 2.7479 -1.7595 0.7257 16 6 2.0625 -0.7681 1.1916 17 8 1.8591 -0.4729 2.4952 18 1 -0.3633 0.4928 0.9018 19 1 -0.3634 0.5347 -0.8776 20 1 -0.3633 -1.0273 -0.0242 21 1 3.1561 1.4128 -0.0241 22 1 1.6932 1.9606 -0.8777 23 1 1.7324 1.9459 0.9019 24 1 5.0405 -4.4287 -2.3534 25 1 2.2848 -1.0873 3.1087 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107075573.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = -21.925075 kcal Electronic energy + Delta-G solvation = -13025.062190 eV Core-core repulsion = 10619.669952 eV Total energy + Delta-G solvation = -2405.392238 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.78384 -37.59722 -35.80308 -34.29926 -32.52731 -29.88011 -27.19716 -25.47053 -23.32979 -21.02396 -19.71022 -18.22515 -17.09336 -15.60296 -15.35402 -14.69219 -14.18963 -13.75711 -13.60504 -13.58200 -12.58743 -12.47302 -12.14228 -11.96956 -11.87564 -11.35515 -11.08086 -10.82429 -10.24899 -9.87271 -9.15228 -9.06938 -8.56010 -7.81083 -6.93232 -4.10049 2.23636 3.20454 3.34757 3.45785 3.69210 3.74334 3.88633 4.36758 4.51506 5.04367 5.12674 5.28087 5.68684 5.79521 5.91968 5.94076 5.98265 6.18948 6.26742 6.35022 7.47354 7.77592 8.02589 8.11778 8.75535 9.07742 9.48006 10.51004 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.040313 B = 0.016974 C = 0.013183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.399131 B = 1649.188542 C = 2123.474480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.116 4.116 4 C 0.442 3.558 5 O -0.538 6.538 6 N -0.271 5.271 7 C -0.394 4.394 8 H 0.114 0.886 9 C 0.025 3.975 10 N -0.865 5.865 11 Si 1.119 2.881 12 H -0.287 1.287 13 H -0.286 1.286 14 H -0.310 1.310 15 N -0.312 5.312 16 C 0.237 3.763 17 O -0.440 6.440 18 H 0.069 0.931 19 H 0.071 0.929 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.275 0.725 25 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 7.634 8.283 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.084 4.084 3 C -0.174 4.174 4 C 0.230 3.770 5 O -0.418 6.418 6 N -0.081 5.081 7 C -0.520 4.520 8 H 0.131 0.869 9 C -0.184 4.184 10 N -0.497 5.497 11 Si 0.951 3.049 12 H -0.214 1.214 13 H -0.213 1.213 14 H -0.240 1.240 15 N -0.143 5.143 16 C 0.011 3.989 17 O -0.234 6.234 18 H 0.088 0.912 19 H 0.090 0.910 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -5.647 6.394 8.878 12.312 hybrid contribution -0.227 1.088 -1.182 1.623 sum -5.874 7.482 7.696 12.236 Atomic orbital electron populations 1.21501 0.90183 1.02843 1.02883 1.20820 0.98955 0.97608 0.91025 1.21506 1.01288 0.91735 1.02866 1.20242 0.83661 0.84087 0.89022 1.90590 1.63081 1.71922 1.16225 1.45014 1.41736 1.23971 0.97377 1.20719 1.37021 1.01256 0.93030 0.86880 1.26589 0.92144 0.91789 1.07909 1.70879 1.25577 1.40876 1.12410 0.82680 0.76512 0.72962 0.72726 1.21432 1.21339 1.23971 1.74278 1.22043 1.20461 0.97559 1.22833 0.97000 0.93179 0.85893 1.84872 1.73375 1.54105 1.11051 0.91171 0.90974 0.92192 0.92217 0.90998 0.91202 0.91412 0.74346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.66 37.16 0.32 -1.50 15 2 C -0.08 -1.47 1.02 -155.99 -0.16 -1.63 15 3 C -0.12 -1.81 8.65 37.16 0.32 -1.49 15 4 C 0.44 10.94 7.02 -10.48 -0.07 10.87 15 5 O -0.54 -14.70 17.79 5.54 0.10 -14.60 15 6 N -0.27 -7.21 3.51 -10.73 -0.04 -7.25 15 7 C -0.39 -11.59 10.28 -15.11 -0.16 -11.75 15 8 H 0.11 3.54 8.00 -52.48 -0.42 3.12 15 9 C 0.02 0.72 5.50 -17.49 -0.10 0.62 15 10 N -0.87 -25.64 13.69 55.49 0.76 -24.88 15 11 Si 1.12 27.11 26.13 -169.99 -4.44 22.67 15 12 H -0.29 -6.62 7.11 56.52 0.40 -6.21 15 13 H -0.29 -6.63 6.44 56.52 0.36 -6.27 15 14 H -0.31 -7.44 7.11 56.52 0.40 -7.04 15 15 N -0.31 -7.23 6.78 32.74 0.22 -7.01 15 16 C 0.24 4.48 7.57 -13.01 -0.10 4.38 15 17 O -0.44 -6.27 13.62 -17.27 -0.24 -6.51 15 18 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 19 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 20 H 0.06 0.99 8.14 -51.93 -0.42 0.57 15 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 15 22 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 24 H 0.28 8.00 8.73 -40.82 -0.36 7.65 15 25 H 0.40 4.15 9.06 45.56 0.41 4.57 15 LS Contribution 225.52 15.07 3.40 3.40 Total: -1.00 -33.58 225.52 -1.91 -35.49 By element: Atomic # 1 Polarization: 0.91 SS G_CDS: -1.73 Total: -0.82 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 0.06 Total: -0.49 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.94 Total: -39.14 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.14 Total: -21.11 kcal Atomic # 14 Polarization: 27.11 SS G_CDS: -4.44 Total: 22.67 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -33.58 -1.91 -35.49 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107075573.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.564 kcal (2) G-P(sol) polarization free energy of solvation -33.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds