Wall clock time and date at job start Mon Mar 30 2020 01:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.52753 * 2 1 4 4 C 1.51633 * 110.75293 * 237.13120 * 2 1 3 5 5 O 1.21302 * 127.34488 * 61.58938 * 4 2 1 6 6 N 1.34880 * 105.30293 * 241.69898 * 4 2 1 7 7 C 1.36832 * 124.37204 * 179.97438 * 6 4 2 8 8 H 1.08008 * 119.99860 * 8.29493 * 7 6 4 9 9 C 1.38818 * 120.00115 * 188.29475 * 7 6 4 10 10 N 1.31466 * 119.99869 * 194.57287 * 9 7 6 11 11 Si 1.86801 * 120.00019 * 14.84615 * 9 7 6 12 12 H 1.48497 * 109.47146 * 269.72507 * 11 9 7 13 13 H 1.48500 * 109.47046 * 29.72893 * 11 9 7 14 14 H 1.48508 * 109.46991 * 149.72460 * 11 9 7 15 15 N 1.39159 * 111.25550 * 359.66108 * 6 4 2 16 16 C 1.29218 * 112.81689 * 0.23086 * 15 6 4 17 17 O 1.35192 * 126.51201 * 179.97438 * 16 15 6 18 18 H 1.09002 * 109.47056 * 298.65280 * 1 2 3 19 19 H 1.09003 * 109.47167 * 58.64823 * 1 2 3 20 20 H 1.08992 * 109.47322 * 178.65328 * 1 2 3 21 21 H 1.09004 * 109.46971 * 181.34639 * 3 2 1 22 22 H 1.09001 * 109.47086 * 301.34861 * 3 2 1 23 23 H 1.09005 * 109.46936 * 61.34925 * 3 2 1 24 24 H 0.96994 * 120.00521 * 355.06663 * 10 9 7 25 25 H 0.96702 * 114.00794 * 0.02664 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0665 1.4328 0.0000 4 6 2.0673 -0.7695 -1.1910 5 8 1.8990 -0.5188 -2.3658 6 7 2.7702 -1.7937 -0.6653 7 6 3.4262 -2.7401 -1.4043 8 1 3.5154 -2.6235 -2.4744 9 6 3.9772 -3.8502 -0.7788 10 7 4.8416 -4.6048 -1.4206 11 14 3.4846 -4.2761 0.9720 12 1 4.4038 -3.6008 1.9230 13 1 2.0933 -3.8199 1.2197 14 1 3.5652 -5.7463 1.1651 15 7 2.7479 -1.7595 0.7257 16 6 2.0625 -0.7681 1.1916 17 8 1.8591 -0.4729 2.4952 18 1 -0.3633 0.4928 0.9018 19 1 -0.3634 0.5347 -0.8776 20 1 -0.3633 -1.0273 -0.0242 21 1 3.1561 1.4128 -0.0241 22 1 1.6932 1.9606 -0.8777 23 1 1.7324 1.9459 0.9019 24 1 5.0405 -4.4287 -2.3534 25 1 2.2848 -1.0873 3.1087 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107075573.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:15 Heat of formation + Delta-G solvation = -50.608076 kcal Electronic energy + Delta-G solvation = -13026.305979 eV Core-core repulsion = 10619.669952 eV Total energy + Delta-G solvation = -2406.636027 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.50208 -39.13607 -37.64033 -35.98543 -34.45166 -31.72819 -28.42660 -27.40662 -24.96608 -22.75405 -21.44967 -20.14501 -18.78238 -17.39482 -17.04748 -16.33473 -15.79812 -15.57714 -15.29711 -15.18861 -14.31830 -13.94279 -13.89821 -13.29260 -13.25103 -13.04129 -12.50847 -12.41778 -12.02873 -11.88563 -11.12882 -10.96646 -10.36965 -9.73579 -9.17361 -6.34531 0.64494 1.43012 1.47314 1.60175 1.84761 1.99252 2.17070 2.41174 2.88643 3.00298 3.65458 3.86693 4.37297 4.42173 4.66826 4.71292 4.72752 4.85287 5.07153 5.13929 5.36831 5.75346 6.07514 6.44769 6.72507 7.09745 7.47328 8.26127 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.040313 B = 0.016974 C = 0.013183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.399131 B = 1649.188542 C = 2123.474480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C -0.112 4.112 4 C 0.427 3.573 5 O -0.584 6.584 6 N -0.299 5.299 7 C -0.411 4.411 8 H 0.068 0.932 9 C -0.015 4.015 10 N -0.891 5.891 11 Si 1.163 2.837 12 H -0.265 1.265 13 H -0.271 1.271 14 H -0.311 1.311 15 N -0.352 5.352 16 C 0.290 3.710 17 O -0.413 6.413 18 H 0.113 0.887 19 H 0.078 0.922 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.077 0.923 23 H 0.113 0.887 24 H 0.263 0.737 25 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 9.415 11.779 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.081 4.081 3 C -0.170 4.170 4 C 0.216 3.784 5 O -0.467 6.467 6 N -0.108 5.108 7 C -0.537 4.537 8 H 0.086 0.914 9 C -0.218 4.218 10 N -0.525 5.525 11 Si 0.988 3.012 12 H -0.190 1.190 13 H -0.197 1.197 14 H -0.241 1.241 15 N -0.185 5.185 16 C 0.064 3.936 17 O -0.208 6.208 18 H 0.132 0.868 19 H 0.097 0.903 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.096 0.904 23 H 0.131 0.869 24 H 0.073 0.927 25 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -7.228 8.192 12.407 16.531 hybrid contribution 0.181 0.719 -2.201 2.323 sum -7.047 8.911 10.206 15.271 Atomic orbital electron populations 1.21600 0.87198 1.02819 1.05468 1.20921 1.01046 0.98264 0.87895 1.21598 1.00430 0.89583 1.05426 1.21352 0.82742 0.84026 0.90234 1.90543 1.64523 1.73084 1.18523 1.44949 1.42627 1.24070 0.99157 1.20336 1.38416 1.03112 0.91869 0.91371 1.28014 0.91240 0.91152 1.11355 1.70958 1.27501 1.41986 1.12037 0.82187 0.77452 0.72742 0.68836 1.19049 1.19719 1.24127 1.74216 1.25769 1.23335 0.95185 1.23103 0.92382 0.90472 0.87643 1.84917 1.72718 1.54346 1.08858 0.86839 0.90306 0.93475 0.93561 0.90363 0.86873 0.92708 0.71392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.06 8.66 71.98 0.62 -2.44 15 2 C -0.07 -2.58 1.02 -53.14 -0.05 -2.64 15 3 C -0.11 -3.05 8.65 71.98 0.62 -2.43 15 4 C 0.43 21.23 7.02 87.94 0.62 21.85 15 5 O -0.58 -32.97 17.79 -3.10 -0.06 -33.02 15 6 N -0.30 -16.04 3.51 -306.18 -1.07 -17.11 15 7 C -0.41 -25.35 10.28 84.05 0.86 -24.48 15 8 H 0.07 4.66 8.00 -2.91 -0.02 4.63 15 9 C -0.02 -0.89 5.50 84.89 0.47 -0.42 15 10 N -0.89 -54.99 13.69 21.64 0.30 -54.70 15 11 Si 1.16 54.17 26.13 68.60 1.79 55.97 15 12 H -0.26 -11.24 7.11 99.48 0.71 -10.54 15 13 H -0.27 -11.72 6.44 99.48 0.64 -11.08 15 14 H -0.31 -14.33 7.11 99.48 0.71 -13.62 15 15 N -0.35 -15.47 6.78 -164.97 -1.12 -16.59 15 16 C 0.29 9.66 7.57 88.73 0.67 10.33 15 17 O -0.41 -8.95 13.62 -84.72 -1.15 -10.10 15 18 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 19 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 20 H 0.05 1.40 8.14 -2.39 -0.02 1.38 15 21 H 0.05 1.38 8.14 -2.38 -0.02 1.36 15 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.11 2.14 8.14 -2.38 -0.02 2.12 15 24 H 0.26 16.31 8.73 -92.71 -0.81 15.50 15 25 H 0.43 5.82 9.06 -74.06 -0.67 5.14 15 Total: -1.00 -77.61 225.52 2.94 -74.67 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: 0.43 Total: 1.12 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 3.81 Total: -0.23 kcal Atomic # 7 Polarization: -86.50 SS G_CDS: -1.89 Total: -88.40 kcal Atomic # 8 Polarization: -41.92 SS G_CDS: -1.21 Total: -43.13 kcal Atomic # 14 Polarization: 54.17 SS G_CDS: 1.79 Total: 55.97 kcal Total: -77.61 2.94 -74.67 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107075573.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.065 kcal (2) G-P(sol) polarization free energy of solvation -77.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds