Wall clock time and date at job start Mon Mar 30 2020 02:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00141 * 2 1 4 4 H 1.48500 * 109.46837 * 269.99162 * 3 2 1 5 5 H 1.48493 * 109.47422 * 29.99729 * 3 2 1 6 6 H 1.48506 * 109.46913 * 149.99713 * 3 2 1 7 7 C 1.37881 * 119.99798 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00021 * 180.02562 * 7 2 1 10 10 C 1.53006 * 109.47239 * 180.02562 * 9 7 2 11 11 C 1.50705 * 109.54076 * 60.00350 * 10 9 7 12 12 O 1.20756 * 119.99841 * 359.97438 * 11 10 9 13 13 C 1.53171 * 109.54162 * 299.82835 * 10 9 7 14 14 C 1.53111 * 109.15582 * 183.23906 * 13 10 9 15 15 O 1.42905 * 109.48677 * 57.47283 * 14 13 10 16 16 C 1.42907 * 114.09607 * 298.88962 * 15 14 13 17 17 C 1.53088 * 109.41297 * 61.16001 * 16 15 14 18 18 H 0.97001 * 119.99668 * 0.02562 * 1 2 3 19 19 H 1.09001 * 109.46613 * 60.00696 * 9 7 2 20 20 H 1.09000 * 109.47374 * 300.00442 * 9 7 2 21 21 H 1.07998 * 120.00044 * 180.02562 * 11 10 9 22 22 H 1.09006 * 109.52667 * 303.05390 * 13 10 9 23 23 H 1.08999 * 109.52647 * 63.24535 * 13 10 9 24 24 H 1.08998 * 109.40448 * 297.49376 * 14 13 10 25 25 H 1.09006 * 109.49139 * 177.50655 * 14 13 10 26 26 H 1.08997 * 109.47920 * 301.17522 * 16 15 14 27 27 H 1.08995 * 109.48528 * 181.14227 * 16 15 14 28 28 H 1.08999 * 109.52275 * 182.48575 * 17 16 15 29 29 H 1.08999 * 109.58081 * 62.32513 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 6 3.5205 -3.3484 -1.2294 12 8 2.8261 -2.7626 -2.0250 13 6 3.5148 -3.3594 1.2529 14 6 4.0957 -4.7756 1.2852 15 8 5.5228 -4.7063 1.2569 16 6 6.0536 -4.0834 0.0854 17 6 5.5532 -2.6388 0.0061 18 1 -0.4850 0.8401 -0.0004 19 1 3.8744 -0.6802 0.8912 20 1 3.8752 -0.6805 -0.8888 21 1 3.7818 -4.3824 -1.3991 22 1 3.8344 -2.8156 2.1419 23 1 2.4263 -3.4112 1.2282 24 1 3.7416 -5.3322 0.4175 25 1 3.7742 -5.2799 2.1965 26 1 5.7250 -4.6309 -0.7980 27 1 7.1425 -4.0888 0.1324 28 1 5.9211 -2.1756 -0.9094 29 1 5.9152 -2.0789 0.8685 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144256594.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:24 Heat of formation + Delta-G solvation = -111.783664 kcal Electronic energy + Delta-G solvation = -13243.971602 eV Core-core repulsion = 10938.223147 eV Total energy + Delta-G solvation = -2305.748456 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.31723 -39.10073 -36.08330 -34.33198 -32.03120 -30.52047 -26.50465 -24.92700 -24.37924 -22.76772 -19.57925 -19.00764 -17.60317 -16.82157 -16.61517 -16.31852 -15.94202 -15.47726 -15.19844 -14.68369 -13.98728 -13.71102 -13.53021 -13.34345 -13.06514 -12.48346 -12.36124 -12.20765 -11.93433 -11.72317 -11.26373 -11.07171 -10.73111 -10.38446 -9.97033 -8.23889 -6.22025 1.24404 1.31632 1.33017 1.43290 2.36334 3.05465 3.10789 3.38844 3.88287 3.93494 3.95811 4.13532 4.36671 4.46358 4.70255 4.74361 4.87899 4.90401 5.00686 5.11947 5.20272 5.29256 5.34982 5.48462 5.69283 6.29312 6.33936 6.69534 6.80879 7.37440 8.93389 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.047918 B = 0.011693 C = 0.011331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.194357 B = 2394.028686 C = 2470.460493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.005 4.005 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.245 1.245 7 C -0.488 4.488 8 H 0.034 0.966 9 C 0.005 3.995 10 C -0.119 4.119 11 C 0.345 3.655 12 O -0.476 6.476 13 C -0.124 4.124 14 C 0.062 3.938 15 O -0.392 6.392 16 C 0.059 3.941 17 C -0.135 4.135 18 H 0.261 0.739 19 H 0.024 0.976 20 H 0.007 0.993 21 H 0.122 0.878 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.063 0.937 25 H 0.111 0.889 26 H 0.066 0.934 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.788 -8.661 1.569 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.200 4.200 3 Si 0.767 3.233 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.168 1.168 7 C -0.526 4.526 8 H 0.052 0.948 9 C -0.033 4.033 10 C -0.120 4.120 11 C 0.201 3.799 12 O -0.346 6.346 13 C -0.162 4.162 14 C -0.014 4.014 15 O -0.311 6.311 16 C -0.018 4.018 17 C -0.173 4.173 18 H 0.070 0.930 19 H 0.042 0.958 20 H 0.025 0.975 21 H 0.138 0.862 22 H 0.088 0.912 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.129 0.871 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.098 0.902 29 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.390 -8.299 1.285 15.806 hybrid contribution -0.669 1.256 -0.249 1.445 sum 12.721 -7.043 1.037 14.578 Atomic orbital electron populations 1.70066 1.08112 1.27524 1.54275 1.25922 0.95587 1.03192 0.95309 0.85771 0.79737 0.79213 0.78550 1.20349 1.21061 1.16794 1.21222 0.91325 0.92702 1.47331 0.94771 1.19464 0.94602 0.93264 0.95948 1.21421 0.97195 0.97128 0.96239 1.26431 0.75453 0.93561 0.84441 1.90441 1.28371 1.70883 1.44953 1.21987 1.00695 0.97140 0.96364 1.22724 0.80601 0.94543 1.03548 1.87895 1.20582 1.79713 1.42898 1.22788 1.00188 0.90547 0.88230 1.22188 0.91696 0.99692 1.03726 0.93004 0.95797 0.97507 0.86208 0.91213 0.92388 0.91892 0.87138 0.91624 0.86249 0.90181 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.55 13.96 21.45 0.30 -62.25 15 2 C -0.01 -0.31 5.47 84.66 0.46 0.15 15 3 Si 0.94 46.52 27.47 68.60 1.88 48.40 15 4 H -0.28 -13.57 7.11 99.48 0.71 -12.86 15 5 H -0.28 -13.73 7.11 99.48 0.71 -13.02 15 6 H -0.24 -11.02 6.54 99.48 0.65 -10.37 15 7 C -0.49 -28.41 7.41 25.60 0.19 -28.23 15 8 H 0.03 2.18 6.53 -2.91 -0.02 2.16 15 9 C 0.00 0.21 2.77 29.85 0.08 0.30 15 10 C -0.12 -4.27 0.52 -52.81 -0.03 -4.29 15 11 C 0.35 12.51 8.66 71.24 0.62 13.13 15 12 O -0.48 -22.96 15.51 -1.44 -0.02 -22.99 15 13 C -0.12 -4.14 4.60 30.69 0.14 -4.00 15 14 C 0.06 1.53 6.61 72.02 0.48 2.00 15 15 O -0.39 -9.61 10.77 -148.98 -1.60 -11.22 15 16 C 0.06 1.20 6.61 72.01 0.48 1.68 15 17 C -0.14 -3.61 4.91 30.68 0.15 -3.45 15 18 H 0.26 16.04 8.31 -92.71 -0.77 15.27 15 19 H 0.02 1.10 7.20 -2.39 -0.02 1.09 15 20 H 0.01 0.32 7.53 -2.39 -0.02 0.31 15 21 H 0.12 3.08 6.16 -2.91 -0.02 3.06 15 22 H 0.07 2.37 8.14 -2.38 -0.02 2.35 15 23 H 0.06 2.29 6.75 -2.39 -0.02 2.27 15 24 H 0.06 1.35 6.82 -2.39 -0.02 1.33 15 25 H 0.11 2.32 8.14 -2.38 -0.02 2.30 15 26 H 0.07 1.13 6.82 -2.39 -0.02 1.12 15 27 H 0.12 1.83 8.14 -2.39 -0.02 1.81 15 28 H 0.08 1.99 8.14 -2.39 -0.02 1.97 15 29 H 0.08 2.08 8.14 -2.39 -0.02 2.06 15 Total: -1.00 -74.12 232.82 4.20 -69.92 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: 1.08 Total: 0.85 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 2.57 Total: -22.72 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: 0.30 Total: -62.25 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.63 Total: -34.20 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.88 Total: 48.40 kcal Total: -74.12 4.20 -69.92 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144256594.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.866 kcal (2) G-P(sol) polarization free energy of solvation -74.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds