Wall clock time and date at job start Mon Mar 30 2020 02:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 119.99823 * 2 1 4 4 H 1.48495 * 109.47265 * 270.00168 * 3 2 1 5 5 H 1.48506 * 109.46986 * 29.99993 * 3 2 1 6 6 H 1.48497 * 109.47543 * 149.99472 * 3 2 1 7 7 C 1.37871 * 120.00338 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00354 * 173.70292 * 7 2 1 9 9 C 1.50698 * 120.00108 * 353.70294 * 7 2 1 10 10 C 1.52999 * 115.54899 * 86.10845 * 9 7 2 11 11 O 1.42905 * 109.47379 * 65.11097 * 10 9 7 12 12 C 1.42896 * 113.99978 * 180.02562 * 11 10 9 13 13 C 1.53369 * 114.56547 * 149.99869 * 12 11 10 14 14 O 1.43351 * 88.44654 * 86.60696 * 13 12 11 15 15 C 1.43353 * 88.32045 * 28.15089 * 14 13 12 16 16 C 1.52998 * 117.49929 * 231.77617 * 9 7 2 17 17 C 1.52996 * 117.50150 * 300.43954 * 9 7 2 18 18 H 0.97003 * 120.00454 * 359.97438 * 1 2 3 19 19 H 1.09006 * 109.47275 * 305.11182 * 10 9 7 20 20 H 1.09003 * 109.47633 * 185.11388 * 10 9 7 21 21 H 1.09000 * 113.56831 * 15.72463 * 12 11 10 22 22 H 1.09000 * 113.39198 * 331.70965 * 13 12 11 23 23 H 1.09002 * 113.39596 * 201.50415 * 13 12 11 24 24 H 1.09003 * 113.39115 * 86.74765 * 15 14 13 25 25 H 1.09000 * 113.39045 * 216.95189 * 15 14 13 26 26 H 1.09003 * 117.49904 * 215.00081 * 16 9 7 27 27 H 1.08999 * 117.49961 * 0.02562 * 16 9 7 28 28 H 1.09009 * 117.49756 * 359.97438 * 17 9 7 29 29 H 1.08997 * 117.50117 * 144.97155 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5465 1.4404 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0797 -1.1968 -0.1021 9 6 1.2579 -2.4951 0.1443 10 6 0.7193 -3.0940 -1.1565 11 8 1.8125 -3.4600 -2.0010 12 6 1.4166 -4.0321 -3.2492 13 6 2.3906 -3.7755 -4.4057 14 8 3.1210 -4.9394 -3.9972 15 6 1.8977 -5.4711 -3.4722 16 6 1.7342 -3.4672 1.2255 17 6 0.4254 -2.6956 1.4121 18 1 -0.4851 0.8400 0.0004 19 1 0.0977 -2.3574 -1.6657 20 1 0.1233 -3.9781 -0.9302 21 1 0.3680 -3.8618 -3.4936 22 1 2.9560 -2.8499 -4.2981 23 1 1.9311 -3.8761 -5.3890 24 1 1.3094 -6.0144 -4.2117 25 1 2.0312 -6.0311 -2.5466 26 1 1.6638 -4.5334 1.0101 27 1 2.5873 -3.1654 1.8331 28 1 0.4180 -1.8865 2.1426 29 1 -0.5062 -3.2538 1.3195 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165478753.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:17 Heat of formation + Delta-G solvation = -46.035552 kcal Electronic energy + Delta-G solvation = -12800.420577 eV Core-core repulsion = 10497.523173 eV Total energy + Delta-G solvation = -2302.897404 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.62732 -38.90344 -36.84475 -33.99359 -30.22688 -28.00249 -27.16750 -26.85369 -22.95038 -21.58928 -21.09961 -18.48681 -17.56608 -17.34769 -16.88975 -16.61135 -15.95303 -15.79408 -15.50609 -14.61249 -13.97329 -13.43088 -13.33187 -12.89482 -12.80204 -12.38164 -12.20307 -12.05434 -11.60890 -11.44734 -10.90524 -10.83641 -10.43164 -10.30035 -9.99048 -8.12463 -6.21578 1.40119 1.41559 1.51914 2.42314 2.51267 3.14375 3.19282 3.33278 3.58935 4.11367 4.27358 4.33486 4.44234 4.51213 4.53655 4.61840 4.69860 4.83833 4.93049 4.98024 5.00933 5.11557 5.22156 5.60624 5.61820 5.76865 6.37870 6.54799 6.81746 7.45648 8.96350 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.036050 B = 0.010919 C = 0.009314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.521995 B = 2563.686547 C = 3005.573468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.027 3.973 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.042 0.958 9 C 0.006 3.994 10 C 0.120 3.880 11 O -0.369 6.369 12 C 0.000 4.000 13 C 0.026 3.974 14 O -0.397 6.397 15 C 0.017 3.983 16 C -0.188 4.188 17 C -0.146 4.146 18 H 0.261 0.739 19 H 0.032 0.968 20 H 0.041 0.959 21 H 0.098 0.902 22 H 0.076 0.924 23 H 0.128 0.872 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.007 -7.301 -6.182 9.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.173 4.173 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.006 3.994 10 C 0.044 3.956 11 O -0.288 6.288 12 C -0.059 4.059 13 C -0.050 4.050 14 O -0.317 6.317 15 C -0.060 4.060 16 C -0.225 4.225 17 C -0.184 4.184 18 H 0.070 0.930 19 H 0.051 0.949 20 H 0.059 0.941 21 H 0.116 0.884 22 H 0.095 0.905 23 H 0.146 0.854 24 H 0.142 0.858 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.691 -7.236 -6.130 9.508 hybrid contribution 0.033 1.100 0.113 1.107 sum -0.658 -6.136 -6.017 8.619 Atomic orbital electron populations 1.70073 1.06782 1.27183 1.50423 1.25604 0.95657 1.01676 0.94372 0.85722 0.78845 0.79848 0.78234 1.20233 1.20392 1.19805 1.20600 0.92511 0.90515 1.50631 0.94003 1.18927 0.99804 0.94220 0.86496 1.22029 0.87269 0.95314 0.91034 1.87986 1.33095 1.80205 1.27503 1.24585 0.99905 0.94886 0.86568 1.24179 0.92540 0.90192 0.98098 1.89811 1.27635 1.34915 1.79317 1.24388 0.85096 0.96370 1.00126 1.22969 0.97577 0.96635 1.05302 1.22446 0.93426 1.01007 1.01477 0.92961 0.94922 0.94083 0.88377 0.90549 0.85423 0.85765 0.89836 0.89164 0.90785 0.91780 0.89911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.41 12.88 21.44 0.28 -51.13 15 2 C 0.03 1.50 5.38 84.65 0.46 1.96 15 3 Si 0.95 44.15 29.54 68.60 2.03 46.18 15 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 15 5 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 6 H -0.27 -12.61 7.11 99.48 0.71 -11.91 15 7 C -0.50 -28.76 8.77 25.60 0.22 -28.54 15 8 H 0.04 2.47 7.82 -2.91 -0.02 2.45 15 9 C 0.01 0.30 1.62 -52.93 -0.09 0.21 15 10 C 0.12 5.44 5.60 71.98 0.40 5.85 15 11 O -0.37 -16.28 10.35 -138.49 -1.43 -17.71 15 12 C 0.00 -0.01 4.82 30.84 0.15 0.13 15 13 C 0.03 0.77 8.60 63.85 0.55 1.32 15 14 O -0.40 -13.38 12.74 -138.49 -1.76 -15.14 15 15 C 0.02 0.45 8.60 63.84 0.55 1.00 15 16 C -0.19 -8.32 9.96 30.62 0.30 -8.02 15 17 C -0.15 -6.81 9.37 30.62 0.29 -6.53 15 18 H 0.26 14.08 8.31 -92.71 -0.77 13.31 15 19 H 0.03 1.60 8.14 -2.38 -0.02 1.58 15 20 H 0.04 1.63 8.09 -2.39 -0.02 1.61 15 21 H 0.10 2.69 7.88 -2.39 -0.02 2.67 15 22 H 0.08 2.46 8.14 -2.39 -0.02 2.44 15 23 H 0.13 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.12 2.26 8.14 -2.39 -0.02 2.24 15 25 H 0.08 2.31 8.14 -2.39 -0.02 2.29 15 26 H 0.09 3.52 8.14 -2.39 -0.02 3.50 15 27 H 0.07 3.30 8.14 -2.39 -0.02 3.28 15 28 H 0.06 3.22 8.14 -2.38 -0.02 3.20 15 29 H 0.08 3.47 8.14 -2.39 -0.02 3.45 15 Total: -1.00 -64.57 254.93 3.06 -61.52 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 1.11 Total: 8.91 kcal Atomic # 6 Polarization: -35.45 SS G_CDS: 2.84 Total: -32.61 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.28 Total: -51.13 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -3.20 Total: -32.86 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -64.57 3.06 -61.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165478753.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.480 kcal (2) G-P(sol) polarization free energy of solvation -64.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds