Wall clock time and date at job start Mon Mar 30 2020 01:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00069 * 2 1 4 4 H 1.48502 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47148 * 299.99685 * 3 2 1 6 6 H 1.48494 * 109.47416 * 60.00199 * 3 2 1 7 7 C 1.37877 * 119.99749 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99724 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00341 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47341 * 179.97438 * 9 7 2 11 11 C 1.45654 * 118.57317 * 89.99953 * 10 9 7 12 12 C 1.49907 * 111.24581 * 199.49811 * 11 10 9 13 13 O 1.21280 * 118.64209 * 160.28025 * 12 11 10 14 14 N 1.33600 * 122.76656 * 340.21223 * 12 11 10 15 15 C 1.45651 * 122.82036 * 0.02562 * 14 12 11 16 16 C 1.33653 * 118.57611 * 269.98234 * 10 9 7 17 17 O 1.21286 * 118.64688 * 359.89378 * 16 10 9 18 18 H 0.97003 * 120.00027 * 359.97438 * 1 2 3 19 19 H 1.09007 * 109.46703 * 59.99907 * 9 7 2 20 20 H 1.08993 * 109.47054 * 300.00418 * 9 7 2 21 21 H 1.09002 * 109.11722 * 319.93711 * 11 10 9 22 22 H 1.09004 * 109.11145 * 79.06411 * 11 10 9 23 23 H 0.97001 * 118.59772 * 179.97438 * 14 12 11 24 24 H 1.09001 * 109.11678 * 258.95812 * 15 14 12 25 25 H 1.09001 * 109.11042 * 139.89878 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0018 11 6 2.6566 -4.1428 1.2768 12 6 3.9314 -4.9164 1.1226 13 8 4.6183 -5.1066 2.1038 14 7 4.3424 -5.4065 -0.0503 15 6 3.5900 -5.2335 -1.2854 16 6 2.6172 -4.0984 -1.1760 17 8 2.1880 -3.6003 -2.1952 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 -0.8904 20 1 0.6246 -2.5571 0.8896 21 1 2.8221 -3.3160 1.9675 22 1 1.8877 -4.7995 1.6840 23 1 5.1781 -5.8980 -0.0810 24 1 3.0440 -6.1516 -1.5024 25 1 4.2845 -5.0314 -2.1010 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168504283.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:27 Heat of formation + Delta-G solvation = -91.601727 kcal Electronic energy + Delta-G solvation = -12623.622748 eV Core-core repulsion = 10215.209103 eV Total energy + Delta-G solvation = -2408.413645 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.87516 -39.96952 -36.80692 -36.24526 -34.63795 -30.28340 -29.49149 -27.53667 -25.02631 -22.81421 -19.37480 -18.89081 -18.83063 -18.36117 -17.41124 -16.94469 -16.05539 -15.52980 -15.27719 -14.94546 -14.75861 -14.35027 -14.01853 -13.33661 -13.17019 -12.96143 -12.62495 -12.27937 -11.76261 -11.35684 -10.89558 -10.65451 -10.25350 -9.65551 -8.25690 -6.39254 1.28823 1.37259 1.38608 1.50097 1.58167 2.01127 2.25234 2.39352 3.04929 3.14260 3.55096 4.23622 4.29822 4.43749 4.48878 4.93426 5.20643 5.35655 5.63276 5.70753 5.94849 6.00995 6.55094 6.69176 6.92100 7.18726 7.33120 8.82360 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.042985 B = 0.010917 C = 0.009984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.234200 B = 2564.215218 C = 2803.785810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.012 3.988 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.253 3.747 10 N -0.596 5.596 11 C 0.100 3.900 12 C 0.524 3.476 13 O -0.575 6.575 14 N -0.701 5.701 15 C 0.114 3.886 16 C 0.485 3.515 17 O -0.584 6.584 18 H 0.268 0.732 19 H 0.014 0.986 20 H 0.033 0.967 21 H 0.108 0.892 22 H 0.124 0.876 23 H 0.421 0.579 24 H 0.137 0.863 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.667 -10.529 0.045 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.068 0.932 9 C 0.132 3.868 10 N -0.328 5.328 11 C -0.025 4.025 12 C 0.310 3.690 13 O -0.455 6.455 14 N -0.356 5.356 15 C -0.013 4.013 16 C 0.273 3.727 17 O -0.464 6.464 18 H 0.077 0.923 19 H 0.033 0.967 20 H 0.051 0.949 21 H 0.126 0.874 22 H 0.141 0.859 23 H 0.261 0.739 24 H 0.154 0.846 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.448 -10.160 0.039 12.034 hybrid contribution 0.303 0.929 -0.076 0.980 sum 6.751 -9.231 -0.037 11.436 Atomic orbital electron populations 1.70030 1.07386 1.28223 1.50743 1.25782 0.95788 1.02858 0.94347 0.85401 0.78632 0.78909 0.78077 1.19516 1.20474 1.19484 1.21665 0.93127 0.92015 1.51637 0.93187 1.18938 0.87873 0.83044 0.96960 1.47661 1.45015 1.34571 1.05563 1.21452 0.94413 0.99596 0.87071 1.20055 0.87073 0.78708 0.83181 1.90766 1.55808 1.60840 1.38080 1.45251 1.27029 1.56420 1.06893 1.21534 0.94561 0.97269 0.87899 1.20873 0.83369 0.85329 0.83109 1.90746 1.59154 1.60983 1.35533 0.92256 0.96739 0.94941 0.87444 0.85860 0.73899 0.84574 0.84386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 13.29 21.45 0.28 -54.31 15 2 C 0.01 0.67 5.46 84.66 0.46 1.13 15 3 Si 0.97 44.47 29.54 68.60 2.03 46.50 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 15 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 15 7 C -0.55 -30.81 9.38 25.60 0.24 -30.57 15 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 15 9 C 0.25 13.02 5.02 85.63 0.43 13.45 15 10 N -0.60 -24.01 2.80 -836.83 -2.34 -26.36 15 11 C 0.10 3.21 6.46 85.54 0.55 3.77 15 12 C 0.52 15.42 7.83 87.59 0.69 16.11 15 13 O -0.58 -20.10 17.82 -3.03 -0.05 -20.15 15 14 N -0.70 -15.39 5.50 -472.41 -2.60 -17.99 15 15 C 0.11 2.49 7.26 85.54 0.62 3.11 15 16 C 0.49 18.23 7.58 87.58 0.66 18.89 15 17 O -0.58 -27.84 16.32 -3.05 -0.05 -27.89 15 18 H 0.27 14.83 8.31 -92.71 -0.77 14.06 15 19 H 0.01 0.85 7.23 -2.38 -0.02 0.83 15 20 H 0.03 1.68 8.03 -2.39 -0.02 1.66 15 21 H 0.11 3.73 8.11 -2.39 -0.02 3.71 15 22 H 0.12 3.23 8.14 -2.39 -0.02 3.21 15 23 H 0.42 6.88 8.84 -92.71 -0.82 6.06 15 24 H 0.14 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.14 2.40 8.14 -2.39 -0.02 2.39 15 Total: -1.00 -73.46 228.34 1.32 -72.15 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 0.39 Total: 2.17 kcal Atomic # 6 Polarization: 22.23 SS G_CDS: 3.66 Total: 25.89 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -4.66 Total: -98.66 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.10 Total: -48.04 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -73.46 1.32 -72.15 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168504283.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.455 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds