Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30514 * 1 3 3 Si 1.86799 * 119.99780 * 2 1 4 4 H 1.48500 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47276 * 300.00255 * 3 2 1 6 6 H 1.48504 * 109.47290 * 60.00026 * 3 2 1 7 7 C 1.40456 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00402 * 180.02562 * 7 2 1 9 9 C 1.41031 * 119.99469 * 359.97438 * 7 2 1 10 10 O 1.21432 * 120.00202 * 0.02562 * 9 7 2 11 11 C 1.50706 * 119.99797 * 180.02562 * 9 7 2 12 12 O 1.42897 * 109.47084 * 180.02562 * 11 9 7 13 13 C 1.42898 * 114.00017 * 179.97438 * 12 11 9 14 14 C 1.54894 * 110.48190 * 93.24436 * 13 12 11 15 15 C 1.55238 * 102.58338 * 156.67678 * 14 13 12 16 16 C 1.54266 * 104.23333 * 322.08174 * 15 14 13 17 17 C 1.53869 * 106.59800 * 23.61579 * 16 15 14 18 18 H 0.97002 * 120.00432 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.47134 * 60.00257 * 11 9 7 20 20 H 1.08999 * 109.46878 * 300.00445 * 11 9 7 21 21 H 1.09002 * 110.43427 * 330.70321 * 13 12 11 22 22 H 1.08996 * 110.75388 * 275.06031 * 14 13 12 23 23 H 1.08993 * 110.76071 * 38.44257 * 14 13 12 24 24 H 1.09005 * 110.46917 * 203.39204 * 15 14 13 25 25 H 1.09007 * 110.58541 * 80.83124 * 15 14 13 26 26 H 1.08999 * 110.03060 * 264.32313 * 16 15 14 27 27 H 1.09006 * 110.06829 * 142.91691 * 16 15 14 28 28 H 1.09001 * 110.02983 * 240.71432 * 17 16 15 29 29 H 1.08996 * 110.07773 * 119.30576 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.6991 1.3465 -0.0006 5 1 1.8803 2.3965 -1.2125 6 1 1.8803 2.3965 1.2125 7 6 2.0075 -1.2163 -0.0005 8 1 3.0875 -1.2163 -0.0001 9 6 1.3024 -2.4377 -0.0005 10 8 0.0880 -2.4377 -0.0005 11 6 2.0559 -3.7428 -0.0005 12 8 1.1274 -4.8290 -0.0011 13 6 1.7419 -6.1190 -0.0018 14 6 1.9008 -6.6444 1.4467 15 6 1.9803 -8.1812 1.2422 16 6 0.9755 -8.4652 0.1066 17 6 0.8240 -7.1541 -0.6844 18 1 -0.4851 0.8400 -0.0004 19 1 2.6826 -3.8006 0.8895 20 1 2.6826 -3.8005 -0.8905 21 1 2.7098 -6.0792 -0.5015 22 1 2.8177 -6.2642 1.8970 23 1 1.0335 -6.3794 2.0511 24 1 1.6845 -8.7027 2.1526 25 1 2.9863 -8.4767 0.9442 26 1 0.0138 -8.7625 0.5247 27 1 1.3587 -9.2515 -0.5439 28 1 -0.2113 -6.8149 -0.6501 29 1 1.1338 -7.3031 -1.7187 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000196898887.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = -106.809886 kcal Electronic energy + Delta-G solvation = -12455.037981 eV Core-core repulsion = 10149.505204 eV Total energy + Delta-G solvation = -2305.532777 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.46294 -36.68514 -34.91699 -32.55569 -28.63008 -28.36640 -27.15333 -25.00321 -20.46727 -20.02184 -19.62174 -16.44038 -16.19511 -15.50452 -14.99105 -14.61346 -14.03510 -13.46857 -13.13128 -12.78466 -12.13880 -11.75831 -11.46864 -11.26013 -11.16100 -11.03781 -10.93462 -10.46841 -10.39834 -10.32245 -10.22379 -10.02641 -8.93626 -8.69207 -7.31455 -6.20904 -4.88866 3.05331 3.14822 3.19766 4.01886 4.26685 4.44119 4.79934 4.84659 5.12190 5.44255 5.51011 5.63974 5.70116 5.76658 5.87779 6.01119 6.09077 6.15278 6.23280 6.42061 6.46935 6.50228 6.63061 6.65988 7.27021 8.03672 8.07272 8.84788 8.89981 10.38590 10.61432 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.090119 B = 0.006939 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.625490 B = 4034.190166 C = 4175.923108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.741 5.741 2 C 0.082 3.918 3 Si 0.908 3.092 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.365 3.635 10 O -0.524 6.524 11 C 0.021 3.979 12 O -0.356 6.356 13 C 0.076 3.924 14 C -0.147 4.147 15 C -0.123 4.123 16 C -0.121 4.121 17 C -0.123 4.123 18 H 0.273 0.727 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.428 -10.140 0.674 11.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.257 3.743 10 O -0.410 6.410 11 C -0.056 4.056 12 O -0.274 6.274 13 C 0.017 3.983 14 C -0.185 4.185 15 C -0.160 4.160 16 C -0.158 4.158 17 C -0.161 4.161 18 H 0.084 0.916 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.451 -10.073 0.667 11.033 hybrid contribution 1.033 0.704 0.010 1.250 sum 5.484 -9.368 0.676 10.877 Atomic orbital electron populations 1.69970 1.07514 1.27886 1.31558 1.25980 0.94604 1.00892 0.92565 0.86300 0.80719 0.81261 0.78476 1.18472 1.19874 1.19870 1.20651 0.94842 0.91454 1.49960 0.91145 1.19476 0.89376 0.86408 0.79005 1.90421 1.15293 1.88259 1.47074 1.23289 0.93562 0.90020 0.98757 1.88126 1.32593 1.12124 1.94583 1.22948 0.95565 0.85242 0.94498 1.23056 1.02277 0.94854 0.98305 1.22324 0.99123 0.96196 0.98384 1.22070 0.99487 0.97133 0.97154 1.22164 1.01590 0.93735 0.98605 0.91604 0.93502 0.93503 0.92469 0.91767 0.90463 0.91800 0.91871 0.91773 0.92052 0.90387 0.91741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -22.01 11.72 55.57 0.65 -21.36 15 2 C 0.08 2.29 5.50 -17.28 -0.10 2.19 15 3 Si 0.91 19.68 29.56 -169.99 -5.03 14.65 15 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 5 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 15 7 C -0.54 -15.28 9.22 -37.69 -0.35 -15.63 15 8 H 0.07 1.82 7.85 -52.49 -0.41 1.41 15 9 C 0.37 10.80 6.98 -33.25 -0.23 10.57 15 10 O -0.52 -17.68 15.02 -14.47 -0.22 -17.89 15 11 C 0.02 0.51 6.14 36.01 0.22 0.73 15 12 O -0.36 -8.38 9.59 -55.13 -0.53 -8.90 15 13 C 0.08 1.34 3.33 -25.07 -0.08 1.25 15 14 C -0.15 -2.24 6.65 -24.55 -0.16 -2.41 15 15 C -0.12 -1.47 6.84 -24.88 -0.17 -1.64 15 16 C -0.12 -1.46 6.80 -25.62 -0.17 -1.63 15 17 C -0.12 -1.87 6.56 -25.62 -0.17 -2.03 15 18 H 0.27 7.22 8.29 -40.82 -0.34 6.88 15 19 H 0.05 1.02 8.14 -51.93 -0.42 0.60 15 20 H 0.05 1.02 8.10 -51.93 -0.42 0.60 15 21 H 0.06 0.93 7.84 -51.93 -0.41 0.52 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.50 15 23 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 26 H 0.06 0.74 8.14 -51.93 -0.42 0.31 15 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 28 H 0.08 1.31 8.07 -51.93 -0.42 0.89 15 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 15 LS Contribution 250.52 15.07 3.78 3.78 Total: -1.00 -33.63 250.52 -6.73 -40.36 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -4.17 Total: -2.04 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.21 Total: -8.60 kcal Atomic # 7 Polarization: -22.01 SS G_CDS: 0.65 Total: -21.36 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.75 Total: -26.80 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.63 -6.73 -40.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196898887.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.446 kcal (2) G-P(sol) polarization free energy of solvation -33.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds