Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30514 * 1 3 3 Si 1.86799 * 119.99780 * 2 1 4 4 H 1.48500 * 109.47123 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47276 * 300.00255 * 3 2 1 6 6 H 1.48504 * 109.47290 * 60.00026 * 3 2 1 7 7 C 1.40456 * 120.00506 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00402 * 180.02562 * 7 2 1 9 9 C 1.41031 * 119.99469 * 359.97438 * 7 2 1 10 10 O 1.21432 * 120.00202 * 0.02562 * 9 7 2 11 11 C 1.50706 * 119.99797 * 180.02562 * 9 7 2 12 12 O 1.42897 * 109.47084 * 180.02562 * 11 9 7 13 13 C 1.42898 * 114.00017 * 179.97438 * 12 11 9 14 14 C 1.54894 * 110.48190 * 93.24436 * 13 12 11 15 15 C 1.55238 * 102.58338 * 156.67678 * 14 13 12 16 16 C 1.54266 * 104.23333 * 322.08174 * 15 14 13 17 17 C 1.53869 * 106.59800 * 23.61579 * 16 15 14 18 18 H 0.97002 * 120.00432 * 0.02562 * 1 2 3 19 19 H 1.08999 * 109.47134 * 60.00257 * 11 9 7 20 20 H 1.08999 * 109.46878 * 300.00445 * 11 9 7 21 21 H 1.09002 * 110.43427 * 330.70321 * 13 12 11 22 22 H 1.08996 * 110.75388 * 275.06031 * 14 13 12 23 23 H 1.08993 * 110.76071 * 38.44257 * 14 13 12 24 24 H 1.09005 * 110.46917 * 203.39204 * 15 14 13 25 25 H 1.09007 * 110.58541 * 80.83124 * 15 14 13 26 26 H 1.08999 * 110.03060 * 264.32313 * 16 15 14 27 27 H 1.09006 * 110.06829 * 142.91691 * 16 15 14 28 28 H 1.09001 * 110.02983 * 240.71432 * 17 16 15 29 29 H 1.08996 * 110.07773 * 119.30576 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 3.6991 1.3465 -0.0006 5 1 1.8803 2.3965 -1.2125 6 1 1.8803 2.3965 1.2125 7 6 2.0075 -1.2163 -0.0005 8 1 3.0875 -1.2163 -0.0001 9 6 1.3024 -2.4377 -0.0005 10 8 0.0880 -2.4377 -0.0005 11 6 2.0559 -3.7428 -0.0005 12 8 1.1274 -4.8290 -0.0011 13 6 1.7419 -6.1190 -0.0018 14 6 1.9008 -6.6444 1.4467 15 6 1.9803 -8.1812 1.2422 16 6 0.9755 -8.4652 0.1066 17 6 0.8240 -7.1541 -0.6844 18 1 -0.4851 0.8400 -0.0004 19 1 2.6826 -3.8006 0.8895 20 1 2.6826 -3.8005 -0.8905 21 1 2.7098 -6.0792 -0.5015 22 1 2.8177 -6.2642 1.8970 23 1 1.0335 -6.3794 2.0511 24 1 1.6845 -8.7027 2.1526 25 1 2.9863 -8.4767 0.9442 26 1 0.0138 -8.7625 0.5247 27 1 1.3587 -9.2515 -0.5439 28 1 -0.2113 -6.8149 -0.6501 29 1 1.1338 -7.3031 -1.7187 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000196898887.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = -128.782786 kcal Electronic energy + Delta-G solvation = -12455.990797 eV Core-core repulsion = 10149.505204 eV Total energy + Delta-G solvation = -2306.485593 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.97302 -38.65989 -36.53624 -34.74090 -30.47924 -29.62915 -28.66242 -26.89462 -21.80481 -21.62021 -21.14437 -18.48364 -17.77196 -17.32072 -16.49145 -16.20861 -15.63500 -15.20466 -14.65500 -14.33297 -13.87364 -13.40460 -13.23924 -13.00553 -12.76036 -12.35028 -12.19954 -12.08751 -12.00550 -11.95403 -11.50795 -11.31410 -11.01401 -10.34123 -9.54436 -8.32902 -7.15452 1.34704 1.38285 1.57917 2.15358 2.20138 2.90119 3.31410 3.67546 3.72601 4.02304 4.24844 4.38891 4.49323 4.56463 4.57571 4.68463 4.74365 4.81634 4.93236 5.06042 5.16654 5.17975 5.21437 5.27682 5.45562 5.91562 6.39064 6.67198 6.80846 8.24856 8.48656 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.090119 B = 0.006939 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.625490 B = 4034.190166 C = 4175.923108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.022 3.978 3 Si 1.004 2.996 4 H -0.243 1.243 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.561 4.561 8 H 0.094 0.906 9 C 0.332 3.668 10 O -0.585 6.585 11 C 0.034 3.966 12 O -0.395 6.395 13 C 0.060 3.940 14 C -0.149 4.149 15 C -0.113 4.113 16 C -0.115 4.115 17 C -0.125 4.125 18 H 0.283 0.717 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.738 -10.463 0.704 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.197 4.197 3 Si 0.821 3.179 4 H -0.166 1.166 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.592 4.592 8 H 0.112 0.888 9 C 0.230 3.770 10 O -0.477 6.477 11 C -0.043 4.043 12 O -0.314 6.314 13 C 0.003 3.997 14 C -0.187 4.187 15 C -0.150 4.150 16 C -0.152 4.152 17 C -0.163 4.163 18 H 0.093 0.907 19 H 0.084 0.916 20 H 0.085 0.915 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.072 0.928 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.791 -10.433 0.699 12.468 hybrid contribution 0.290 0.763 -0.010 0.816 sum 7.081 -9.670 0.688 12.005 Atomic orbital electron populations 1.70120 1.10157 1.29928 1.31933 1.27361 0.95521 1.05815 0.90960 0.84898 0.79509 0.74499 0.78966 1.16559 1.18852 1.18858 1.21244 0.96187 0.92124 1.49630 0.88782 1.20391 0.89147 0.89392 0.78119 1.90371 1.17631 1.89649 1.50065 1.22922 0.92801 0.88062 1.00489 1.88076 1.34125 1.14215 1.95011 1.23394 0.96589 0.83071 0.96662 1.23045 1.01575 0.97641 0.96395 1.22322 1.00303 0.93294 0.99115 1.22075 1.00092 0.95839 0.97242 1.22226 0.99459 0.94723 0.99905 0.90685 0.91598 0.91463 0.90816 0.91049 0.92793 0.90130 0.89796 0.91422 0.89348 0.93114 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.32 11.72 21.91 0.26 -48.06 15 2 C 0.02 1.22 5.50 85.43 0.47 1.69 15 3 Si 1.00 39.71 29.56 68.60 2.03 41.74 15 4 H -0.24 -8.82 7.11 99.48 0.71 -8.11 15 5 H -0.26 -9.97 7.11 99.48 0.71 -9.27 15 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 7 C -0.56 -32.10 9.22 23.50 0.22 -31.89 15 8 H 0.09 4.75 7.85 -2.91 -0.02 4.73 15 9 C 0.33 20.26 6.98 26.37 0.18 20.44 15 10 O -0.59 -41.49 15.02 15.52 0.23 -41.25 15 11 C 0.03 1.66 6.14 71.24 0.44 2.10 15 12 O -0.39 -19.06 9.59 -129.96 -1.25 -20.30 15 13 C 0.06 2.08 3.33 31.67 0.11 2.19 15 14 C -0.15 -4.38 6.65 32.01 0.21 -4.17 15 15 C -0.11 -2.37 6.84 31.79 0.22 -2.15 15 16 C -0.11 -2.48 6.80 31.32 0.21 -2.27 15 17 C -0.13 -3.71 6.56 31.32 0.21 -3.51 15 18 H 0.28 15.28 8.29 -92.71 -0.77 14.51 15 19 H 0.07 2.85 8.14 -2.39 -0.02 2.83 15 20 H 0.07 2.89 8.10 -2.39 -0.02 2.87 15 21 H 0.07 2.27 7.84 -2.39 -0.02 2.25 15 22 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 24 H 0.08 1.46 8.14 -2.38 -0.02 1.44 15 25 H 0.08 1.45 8.14 -2.38 -0.02 1.43 15 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 15 27 H 0.09 1.47 8.14 -2.38 -0.02 1.46 15 28 H 0.05 1.75 8.07 -2.39 -0.02 1.74 15 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 Total: -1.00 -76.35 250.52 4.65 -71.69 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.12 Total: 13.75 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 2.26 Total: -17.57 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: 0.26 Total: -48.06 kcal Atomic # 8 Polarization: -60.54 SS G_CDS: -1.01 Total: -61.55 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -76.35 4.65 -71.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000196898887.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.089 kcal (2) G-P(sol) polarization free energy of solvation -76.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds