Wall clock time and date at job start Mon Mar 30 2020 02:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47885 * 2 1 4 4 F 1.39902 * 109.47189 * 120.00173 * 2 1 3 5 5 C 1.53002 * 109.46985 * 239.99766 * 2 1 3 6 6 N 1.46506 * 109.47035 * 174.99989 * 5 2 1 7 7 C 1.34501 * 125.67275 * 124.72128 * 6 5 2 8 8 C 1.39277 * 107.18825 * 179.90932 * 7 6 5 9 9 C 1.41594 * 126.55999 * 180.13568 * 8 7 6 10 10 H 1.07998 * 120.00052 * 0.27698 * 9 8 7 11 11 C 1.39702 * 120.00151 * 180.27959 * 9 8 7 12 12 N 1.31029 * 119.99881 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99955 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47330 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46706 * 120.00193 * 13 11 9 16 16 H 1.48496 * 109.47089 * 239.99895 * 13 11 9 17 17 C 1.41886 * 106.88290 * 0.34837 * 8 7 6 18 18 N 1.30315 * 108.04876 * 359.78468 * 17 8 7 19 19 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47025 * 300.00425 * 1 2 3 21 21 H 1.09004 * 109.47054 * 59.99437 * 1 2 3 22 22 H 1.09004 * 109.46930 * 55.00219 * 5 2 1 23 23 H 1.09000 * 109.47312 * 295.00163 * 5 2 1 24 24 H 1.08004 * 126.40931 * 0.02583 * 7 6 5 25 25 H 0.96991 * 119.99973 * 179.97438 * 12 11 9 26 26 H 1.08002 * 125.97536 * 179.78443 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6595 1.1423 5 6 2.0399 -0.7213 -1.2492 6 7 3.5000 -0.6179 -1.3110 7 6 4.3562 -1.6510 -1.4037 8 6 5.6425 -1.1179 -1.4374 9 6 6.8542 -1.8439 -1.5340 10 1 6.8344 -2.9220 -1.5947 11 6 8.0755 -1.1658 -1.5509 12 7 8.0996 0.1422 -1.4768 13 14 9.6741 -2.1238 -1.6778 14 1 9.3762 -3.5770 -1.7473 15 1 10.4036 -1.7093 -2.9030 16 1 10.5133 -1.8465 -0.4844 17 6 5.5065 0.2918 -1.3512 18 7 4.2358 0.5712 -1.2772 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 1.6053 -0.2618 -2.1370 23 1 1.7515 -1.7716 -1.2056 24 1 4.0952 -2.6982 -1.4463 25 1 8.9475 0.6130 -1.4882 26 1 6.3148 1.0081 -1.3475 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212276443.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:47 Heat of formation + Delta-G solvation = 11.526704 kcal Electronic energy + Delta-G solvation = -12248.890468 eV Core-core repulsion = 9857.321597 eV Total energy + Delta-G solvation = -2391.568871 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.24647 -39.14210 -34.22028 -33.02265 -30.27795 -28.94340 -26.17733 -24.12242 -21.60755 -19.46748 -19.15945 -17.13520 -16.30500 -15.21134 -15.10648 -14.76714 -14.15131 -13.29725 -12.82666 -12.68636 -12.46017 -12.21258 -11.78796 -11.20161 -11.15820 -10.97911 -10.74298 -10.58374 -10.36974 -9.95589 -9.20176 -8.79014 -7.79203 -7.12433 -6.39154 -3.95476 3.06655 3.23341 3.28599 3.44214 3.84918 4.17652 4.44546 4.66958 4.86380 5.10293 5.21661 5.41787 5.62648 5.68432 5.82315 6.00449 6.20398 6.45710 6.89542 7.36569 7.54415 7.71912 8.18291 8.55835 8.68937 9.09117 9.21377 9.52334 10.60836 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.084398 B = 0.008029 C = 0.007849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 331.680653 B = 3486.557145 C = 3566.627106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.075 3.925 3 H 0.093 0.907 4 F -0.211 7.211 5 C 0.128 3.872 6 N -0.396 5.396 7 C -0.120 4.120 8 C -0.020 4.020 9 C -0.437 4.437 10 H 0.068 0.932 11 C 0.066 3.934 12 N -0.844 5.844 13 Si 0.915 3.085 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.035 3.965 18 N -0.343 5.343 19 H 0.066 0.934 20 H 0.068 0.932 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.140 0.860 25 H 0.272 0.728 26 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.168 -0.662 0.578 9.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.038 3.962 3 H 0.111 0.889 4 F -0.192 7.192 5 C 0.004 3.996 6 N -0.185 5.185 7 C -0.259 4.259 8 C -0.030 4.030 9 C -0.472 4.472 10 H 0.087 0.913 11 C -0.144 4.144 12 N -0.476 5.476 13 Si 0.741 3.259 14 H -0.191 1.191 15 H -0.204 1.204 16 H -0.204 1.204 17 C -0.152 4.152 18 N -0.165 5.165 19 H 0.085 0.915 20 H 0.087 0.913 21 H 0.094 0.906 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.157 0.843 25 H 0.083 0.917 26 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.945 0.345 0.690 9.975 hybrid contribution 1.348 -1.228 -0.059 1.825 sum -8.597 -0.883 0.631 8.665 Atomic orbital electron populations 1.22339 0.94302 1.03345 1.03458 1.21948 0.93907 0.97701 0.82641 0.88939 1.92820 1.90412 1.83241 1.52678 1.21769 0.79329 1.01386 0.97123 1.47273 1.03318 1.04658 1.63262 1.22187 0.90265 0.91929 1.21549 1.18219 0.91541 0.91945 1.01309 1.18770 0.89203 0.93792 1.45402 0.91328 1.25638 1.00513 0.94822 0.93446 1.69455 1.27191 1.07748 1.43215 0.86156 0.81353 0.80324 0.78050 1.19063 1.20412 1.20389 1.25101 0.92051 0.97887 1.00157 1.76477 1.06454 1.06405 1.27152 0.91511 0.91340 0.90619 0.90345 0.89420 0.84296 0.91673 0.78047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.65 37.15 0.36 -1.56 15 2 C 0.08 1.19 4.09 -26.73 -0.11 1.08 15 3 H 0.09 1.57 8.03 -51.93 -0.42 1.15 15 4 F -0.21 -4.06 17.07 2.25 0.04 -4.02 15 5 C 0.13 2.19 6.23 -4.04 -0.03 2.17 15 6 N -0.40 -9.27 3.64 -60.40 -0.22 -9.49 15 7 C -0.12 -3.03 11.50 -16.00 -0.18 -3.21 15 8 C -0.02 -0.57 5.93 -106.84 -0.63 -1.21 15 9 C -0.44 -12.28 9.40 -37.76 -0.35 -12.63 15 10 H 0.07 1.85 7.84 -52.49 -0.41 1.44 15 11 C 0.07 1.75 5.49 -17.35 -0.10 1.65 15 12 N -0.84 -22.83 10.33 55.54 0.57 -22.26 15 13 Si 0.91 20.04 29.56 -169.99 -5.02 15.01 15 14 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 15 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 16 H -0.28 -6.02 7.11 56.52 0.40 -5.61 15 17 C 0.04 0.98 10.91 -16.80 -0.18 0.80 15 18 N -0.34 -8.87 12.20 30.97 0.38 -8.49 15 19 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.07 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.09 1.32 8.06 -51.93 -0.42 0.90 15 24 H 0.14 3.14 8.06 -52.48 -0.42 2.72 15 25 H 0.27 6.76 8.30 -40.82 -0.34 6.42 15 26 H 0.20 5.69 5.77 -52.49 -0.30 5.39 15 LS Contribution 235.94 15.07 3.56 3.56 Total: -1.00 -30.91 235.94 -4.72 -35.64 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -2.80 Total: 2.95 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -1.23 Total: -12.90 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.73 Total: -40.23 kcal Atomic # 9 Polarization: -4.06 SS G_CDS: 0.04 Total: -4.02 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.91 -4.72 -35.64 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212276443.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.163 kcal (2) G-P(sol) polarization free energy of solvation -30.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds