Wall clock time and date at job start Mon Mar 30 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86810 * 119.99450 * 2 1 4 4 H 1.48504 * 109.46916 * 90.00307 * 3 2 1 5 5 H 1.48502 * 109.46872 * 209.99886 * 3 2 1 6 6 H 1.48493 * 109.47216 * 330.00133 * 3 2 1 7 7 C 1.39694 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99914 * 15.78356 * 7 2 1 9 9 C 1.41597 * 119.99821 * 195.78872 * 7 2 1 10 10 C 1.41883 * 126.56152 * 19.52657 * 9 7 2 11 11 N 1.30317 * 108.04904 * 179.97438 * 10 9 7 12 12 N 1.39872 * 109.23146 * 359.97438 * 11 10 9 13 13 C 1.46497 * 125.67557 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47084 * 304.96997 * 13 12 11 15 15 C 1.53002 * 109.47510 * 179.97438 * 14 13 12 16 16 F 1.39893 * 109.47335 * 180.02562 * 15 14 13 17 17 C 1.34506 * 108.64799 * 359.74605 * 12 11 10 18 18 H 0.97006 * 119.99823 * 174.96691 * 1 2 3 19 19 H 1.08001 * 125.97019 * 359.93891 * 10 9 7 20 20 H 1.09000 * 109.47642 * 64.97612 * 13 12 11 21 21 H 1.09000 * 109.47457 * 184.97390 * 13 12 11 22 22 H 1.09001 * 109.47193 * 300.00257 * 14 13 12 23 23 H 1.09002 * 109.46961 * 60.00333 * 14 13 12 24 24 H 1.08996 * 109.47151 * 300.01103 * 15 14 13 25 25 H 1.09002 * 109.46629 * 60.00261 * 15 14 13 26 26 H 1.08001 * 126.40652 * 180.26325 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6179 0.0000 4 1 2.4916 2.0465 1.4001 5 1 3.5417 1.4404 -0.7000 6 1 1.4415 2.6527 -0.7000 7 6 2.0088 -1.2097 -0.0005 8 1 1.4994 -2.1273 -0.2554 9 6 3.3847 -1.2329 0.3331 10 6 4.0985 -0.2348 1.0454 11 7 5.3382 -0.6226 1.1507 12 7 5.4869 -1.8652 0.5260 13 6 6.7324 -2.6307 0.4322 14 6 7.8193 -1.7606 -0.2021 15 6 9.1203 -2.5598 -0.2996 16 9 10.1142 -1.7640 -0.8790 17 6 4.2946 -2.2431 0.0311 18 1 -0.4850 -0.8369 -0.0737 19 1 3.6866 0.6857 1.4320 20 1 7.0475 -2.9358 1.4300 21 1 6.5697 -3.5152 -0.1837 22 1 7.5042 -1.4555 -1.2000 23 1 7.9820 -0.8761 0.4137 24 1 9.4351 -2.8645 0.6984 25 1 8.9579 -3.4445 -0.9152 26 1 4.0831 -3.1576 -0.5032 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212276619.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:40 Heat of formation + Delta-G solvation = 7.724194 kcal Electronic energy + Delta-G solvation = -12034.697457 eV Core-core repulsion = 9642.963697 eV Total energy + Delta-G solvation = -2391.733760 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.67340 -39.65401 -34.83662 -33.20582 -30.45442 -29.29296 -26.03871 -23.61613 -22.11787 -20.08498 -19.29103 -17.77448 -16.45654 -16.07341 -15.60217 -14.94978 -14.24494 -14.10099 -13.33243 -13.00798 -12.86512 -12.19287 -11.75749 -11.51584 -11.26198 -11.05506 -10.78124 -10.66298 -9.99375 -9.79643 -9.07580 -8.91873 -8.19954 -7.47536 -6.92255 -4.09485 2.94133 3.24726 3.43558 3.48900 3.60189 4.03120 4.22685 4.59750 4.68347 4.82429 5.02961 5.15259 5.40410 5.46171 5.64861 5.88729 6.08833 6.14982 6.24143 6.90759 7.22103 7.55274 7.91513 8.18275 8.49936 8.68069 8.99144 9.14442 10.42127 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.065659 B = 0.008101 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.346003 B = 3455.736764 C = 3694.588913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.039 3.961 3 Si 1.068 2.932 4 H -0.279 1.279 5 H -0.268 1.268 6 H -0.290 1.290 7 C -0.516 4.516 8 H 0.067 0.933 9 C -0.021 4.021 10 C -0.032 4.032 11 N -0.308 5.308 12 N -0.382 5.382 13 C 0.153 3.847 14 C -0.167 4.167 15 C 0.066 3.934 16 F -0.219 7.219 17 C -0.117 4.117 18 H 0.278 0.722 19 H 0.163 0.837 20 H 0.069 0.931 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.574 -4.173 -0.355 13.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.175 4.175 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.193 1.193 6 H -0.217 1.217 7 C -0.550 4.550 8 H 0.086 0.914 9 C -0.031 4.031 10 C -0.217 4.217 11 N -0.132 5.132 12 N -0.171 5.171 13 C 0.030 3.970 14 C -0.205 4.205 15 C 0.010 3.990 16 F -0.201 7.201 17 C -0.257 4.257 18 H 0.089 0.911 19 H 0.180 0.820 20 H 0.087 0.913 21 H 0.104 0.896 22 H 0.097 0.903 23 H 0.106 0.894 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 13.513 -2.345 0.093 13.715 hybrid contribution -0.755 -2.056 -0.408 2.228 sum 12.758 -4.401 -0.315 13.499 Atomic orbital electron populations 1.70628 1.07598 1.32161 1.37708 1.26777 0.95821 1.03602 0.91318 0.83740 0.75389 0.73846 0.77364 1.20669 1.19335 1.21685 1.19676 0.92827 0.96146 1.46302 0.91448 1.18336 0.94589 0.92106 0.98071 1.23889 0.92051 1.01650 1.04108 1.76380 1.20218 0.96891 1.19668 1.47385 1.06765 1.15650 1.47305 1.21075 0.82386 0.92731 1.00809 1.22487 0.93789 1.00604 1.03650 1.21905 0.85561 0.92758 0.98732 1.92760 1.63699 1.76841 1.86759 1.22274 0.85089 1.04490 1.13818 0.91069 0.82003 0.91267 0.89650 0.90326 0.89447 0.90645 0.90742 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.48 13.67 55.54 0.76 -23.72 15 2 C 0.04 1.08 5.50 -17.35 -0.10 0.98 15 3 Si 1.07 25.18 24.91 -169.99 -4.23 20.95 15 4 H -0.28 -6.15 6.59 56.52 0.37 -5.78 15 5 H -0.27 -6.30 6.65 56.52 0.38 -5.93 15 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.52 -14.59 9.77 -37.76 -0.37 -14.95 15 8 H 0.07 1.97 8.06 -52.49 -0.42 1.55 15 9 C -0.02 -0.55 5.47 -106.84 -0.58 -1.14 15 10 C -0.03 -0.79 9.32 -16.80 -0.16 -0.95 15 11 N -0.31 -7.25 12.30 30.97 0.38 -6.87 15 12 N -0.38 -8.02 3.65 -60.40 -0.22 -8.25 15 13 C 0.15 2.23 6.48 -4.04 -0.03 2.21 15 14 C -0.17 -2.24 5.84 -26.73 -0.16 -2.40 15 15 C 0.07 0.67 7.55 37.16 0.28 0.95 15 16 F -0.22 -2.87 17.36 2.25 0.04 -2.83 15 17 C -0.12 -2.71 11.50 -15.99 -0.18 -2.89 15 18 H 0.28 7.81 8.73 -40.82 -0.36 7.46 15 19 H 0.16 3.89 4.27 -52.49 -0.22 3.66 15 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.09 1.02 8.06 -51.93 -0.42 0.60 15 22 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 23 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 15 26 H 0.15 3.03 8.06 -52.49 -0.42 2.60 15 LS Contribution 231.56 15.07 3.49 3.49 Total: -1.00 -31.12 231.56 -3.89 -35.00 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -2.81 Total: 0.40 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.29 Total: -18.18 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.92 Total: -38.84 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -4.23 Total: 20.95 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -31.12 -3.89 -35.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212276619.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.729 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds