Wall clock time and date at job start Mon Mar 30 2020 02:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86810 * 119.99450 * 2 1 4 4 H 1.48504 * 109.46916 * 90.00307 * 3 2 1 5 5 H 1.48502 * 109.46872 * 209.99886 * 3 2 1 6 6 H 1.48493 * 109.47216 * 330.00133 * 3 2 1 7 7 C 1.39694 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99914 * 15.78356 * 7 2 1 9 9 C 1.41597 * 119.99821 * 195.78872 * 7 2 1 10 10 C 1.41883 * 126.56152 * 19.52657 * 9 7 2 11 11 N 1.30317 * 108.04904 * 179.97438 * 10 9 7 12 12 N 1.39872 * 109.23146 * 359.97438 * 11 10 9 13 13 C 1.46497 * 125.67557 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47084 * 304.96997 * 13 12 11 15 15 C 1.53002 * 109.47510 * 179.97438 * 14 13 12 16 16 F 1.39893 * 109.47335 * 180.02562 * 15 14 13 17 17 C 1.34506 * 108.64799 * 359.74605 * 12 11 10 18 18 H 0.97006 * 119.99823 * 174.96691 * 1 2 3 19 19 H 1.08001 * 125.97019 * 359.93891 * 10 9 7 20 20 H 1.09000 * 109.47642 * 64.97612 * 13 12 11 21 21 H 1.09000 * 109.47457 * 184.97390 * 13 12 11 22 22 H 1.09001 * 109.47193 * 300.00257 * 14 13 12 23 23 H 1.09002 * 109.46961 * 60.00333 * 14 13 12 24 24 H 1.08996 * 109.47151 * 300.01103 * 15 14 13 25 25 H 1.09002 * 109.46629 * 60.00261 * 15 14 13 26 26 H 1.08001 * 126.40652 * 180.26325 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6179 0.0000 4 1 2.4916 2.0465 1.4001 5 1 3.5417 1.4404 -0.7000 6 1 1.4415 2.6527 -0.7000 7 6 2.0088 -1.2097 -0.0005 8 1 1.4994 -2.1273 -0.2554 9 6 3.3847 -1.2329 0.3331 10 6 4.0985 -0.2348 1.0454 11 7 5.3382 -0.6226 1.1507 12 7 5.4869 -1.8652 0.5260 13 6 6.7324 -2.6307 0.4322 14 6 7.8193 -1.7606 -0.2021 15 6 9.1203 -2.5598 -0.2996 16 9 10.1142 -1.7640 -0.8790 17 6 4.2946 -2.2431 0.0311 18 1 -0.4850 -0.8369 -0.0737 19 1 3.6866 0.6857 1.4320 20 1 7.0475 -2.9358 1.4300 21 1 6.5697 -3.5152 -0.1837 22 1 7.5042 -1.4555 -1.2000 23 1 7.9820 -0.8761 0.4137 24 1 9.4351 -2.8645 0.6984 25 1 8.9579 -3.4445 -0.9152 26 1 4.0831 -3.1576 -0.5032 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212276619.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:39 Heat of formation + Delta-G solvation = -13.325921 kcal Electronic energy + Delta-G solvation = -12035.610258 eV Core-core repulsion = 9642.963697 eV Total energy + Delta-G solvation = -2392.646562 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.58630 -41.48282 -36.25063 -35.09489 -31.99766 -31.23721 -27.48425 -25.37671 -23.32968 -21.81403 -21.14257 -19.70375 -17.70095 -17.30754 -16.71793 -16.24774 -15.81678 -15.46287 -15.06406 -14.78691 -14.58669 -13.96331 -13.14887 -13.11282 -12.74801 -12.45488 -12.09666 -11.91913 -11.67408 -11.55204 -11.01438 -10.93670 -9.97911 -9.46124 -9.02595 -6.20573 1.11817 1.36808 1.55535 1.74906 1.95531 2.05231 2.31312 3.29772 3.50505 3.77715 3.91007 4.09775 4.20733 4.30074 4.39920 4.43827 4.70153 4.84356 5.06877 5.17901 5.29931 5.59221 5.78070 6.34050 6.38358 6.73331 7.02900 7.15404 8.30268 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.065659 B = 0.008101 C = 0.007577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.346003 B = 3455.736764 C = 3694.588913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C -0.001 4.001 3 Si 1.104 2.896 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.283 1.283 7 C -0.538 4.538 8 H 0.039 0.961 9 C -0.068 4.068 10 C -0.048 4.048 11 N -0.315 5.315 12 N -0.369 5.369 13 C 0.138 3.862 14 C -0.160 4.160 15 C 0.069 3.931 16 F -0.236 7.236 17 C -0.085 4.085 18 H 0.268 0.732 19 H 0.167 0.833 20 H 0.096 0.904 21 H 0.122 0.878 22 H 0.061 0.939 23 H 0.065 0.935 24 H 0.101 0.899 25 H 0.105 0.895 26 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.178 -5.116 -0.203 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.208 4.208 3 Si 0.928 3.072 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.058 0.942 9 C -0.078 4.078 10 C -0.232 4.232 11 N -0.141 5.141 12 N -0.157 5.157 13 C 0.018 3.982 14 C -0.199 4.199 15 C 0.014 3.986 16 F -0.218 7.218 17 C -0.228 4.228 18 H 0.078 0.922 19 H 0.184 0.816 20 H 0.114 0.886 21 H 0.140 0.860 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.120 0.880 25 H 0.123 0.877 26 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 16.157 -3.302 0.265 16.493 hybrid contribution -1.346 -1.993 -0.476 2.452 sum 14.811 -5.295 -0.212 15.730 Atomic orbital electron populations 1.70714 1.08270 1.31493 1.40903 1.27887 0.95915 1.06348 0.90660 0.83271 0.74253 0.71030 0.78689 1.18243 1.19421 1.20973 1.19676 0.94219 0.95414 1.47936 0.94235 1.18493 0.94548 0.94345 1.00459 1.23941 0.92424 1.02053 1.04734 1.76362 1.19362 0.98104 1.20229 1.47987 1.08217 1.14871 1.44598 1.21694 0.79918 0.93204 1.03406 1.22369 0.95292 1.00230 1.01979 1.22041 0.83228 0.92435 1.00864 1.92731 1.64281 1.77573 1.87197 1.22782 0.85333 1.03865 1.10802 0.92193 0.81637 0.88615 0.85954 0.92006 0.91640 0.88037 0.87731 0.80683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -52.41 13.67 21.79 0.30 -52.11 15 2 C 0.00 -0.04 5.50 85.17 0.47 0.43 15 3 Si 1.10 51.19 24.91 68.60 1.71 52.89 15 4 H -0.26 -10.81 6.59 99.48 0.66 -10.15 15 5 H -0.27 -12.36 6.65 99.48 0.66 -11.70 15 6 H -0.28 -12.63 7.11 99.48 0.71 -11.93 15 7 C -0.54 -31.16 9.77 23.45 0.23 -30.94 15 8 H 0.04 2.41 8.06 -2.91 -0.02 2.38 15 9 C -0.07 -3.55 5.47 -21.30 -0.12 -3.67 15 10 C -0.05 -2.37 9.32 85.82 0.80 -1.57 15 11 N -0.32 -14.20 12.30 -55.94 -0.69 -14.89 15 12 N -0.37 -14.28 3.65 -345.02 -1.26 -15.54 15 13 C 0.14 3.38 6.48 86.38 0.56 3.94 15 14 C -0.16 -3.76 5.84 30.60 0.18 -3.58 15 15 C 0.07 1.11 7.55 71.98 0.54 1.66 15 16 F -0.24 -5.49 17.36 44.97 0.78 -4.71 15 17 C -0.08 -3.70 11.50 84.53 0.97 -2.73 15 18 H 0.27 15.80 8.73 -92.70 -0.81 14.99 15 19 H 0.17 7.81 4.27 -2.91 -0.01 7.80 15 20 H 0.10 1.96 8.14 -2.39 -0.02 1.94 15 21 H 0.12 2.17 8.06 -2.39 -0.02 2.15 15 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.10 1.15 8.14 -2.39 -0.02 1.14 15 25 H 0.10 1.11 8.14 -2.39 -0.02 1.09 15 26 H 0.18 6.59 8.06 -2.91 -0.02 6.57 15 Total: -1.00 -68.60 231.56 5.51 -63.08 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: 1.04 Total: 7.74 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 3.64 Total: -36.46 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -1.65 Total: -82.54 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.78 Total: -4.71 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 1.71 Total: 52.89 kcal Total: -68.60 5.51 -63.08 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212276619.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.756 kcal (2) G-P(sol) polarization free energy of solvation -68.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds