Wall clock time and date at job start Mon Mar 30 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34766 * 124.17700 * 2 1 4 4 O 1.21232 * 127.16158 * 0.02562 * 3 2 1 5 5 C 1.51582 * 105.68132 * 179.97438 * 3 2 1 6 6 H 1.09008 * 110.89608 * 241.64794 * 5 3 2 7 7 C 1.50699 * 110.43687 * 118.77156 * 5 3 2 8 8 H 1.08008 * 119.99696 * 245.92451 * 7 5 3 9 9 C 1.37870 * 120.00214 * 65.91512 * 7 5 3 10 10 N 1.31514 * 120.00169 * 0.02562 * 9 7 5 11 11 Si 1.86806 * 120.00081 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46920 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46722 * 120.00106 * 11 9 7 14 14 H 1.48500 * 109.47161 * 240.00105 * 11 9 7 15 15 N 1.47307 * 103.59525 * 0.31533 * 5 3 2 16 16 C 1.46501 * 126.69311 * 179.76783 * 15 5 3 17 17 C 1.33792 * 124.17753 * 180.30413 * 2 1 3 18 18 O 1.21540 * 123.76610 * 359.95659 * 17 2 1 19 19 H 1.08995 * 109.47300 * 179.72422 * 1 2 3 20 20 H 1.08998 * 109.46544 * 299.72262 * 1 2 3 21 21 H 1.09004 * 109.47112 * 59.72149 * 1 2 3 22 22 H 0.97001 * 120.00105 * 179.97438 * 10 9 7 23 23 H 1.08998 * 109.47406 * 180.02562 * 16 15 5 24 24 H 1.09004 * 109.47117 * 300.02876 * 16 15 5 25 25 H 1.09004 * 109.46912 * 60.02384 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8342 2.2635 0.0004 5 6 3.6596 0.6341 0.0007 6 1 4.1814 0.9696 0.8970 7 6 4.3747 1.1114 -1.2370 8 1 4.7124 0.3982 -1.9745 9 6 4.5978 2.4585 -1.4280 10 7 4.1870 3.3269 -0.5298 11 14 5.4836 3.0502 -2.9625 12 1 5.8395 1.8835 -3.8095 13 1 4.5951 3.9629 -3.7260 14 1 6.7198 3.7746 -2.5722 15 7 3.5338 -0.8336 -0.0069 16 6 4.6295 -1.8061 -0.0142 17 6 2.2166 -1.1068 -0.0059 18 8 1.7602 -2.2333 -0.0111 19 1 -0.3633 -1.0276 -0.0049 20 1 -0.3632 0.5095 0.8925 21 1 -0.3633 0.5182 -0.8875 22 1 4.3443 4.2746 -0.6641 23 1 4.2190 -2.8159 -0.0192 24 1 5.2409 -1.6579 -0.9043 25 1 5.2437 -1.6680 0.8756 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213897911.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:27 Heat of formation + Delta-G solvation = -36.183322 kcal Electronic energy + Delta-G solvation = -12999.453958 eV Core-core repulsion = 10593.443436 eV Total energy + Delta-G solvation = -2406.010522 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.10321 -37.33147 -35.23970 -34.30481 -32.65433 -29.07347 -27.22695 -25.09068 -23.66218 -21.03352 -19.22410 -17.11456 -16.46311 -15.77574 -15.21968 -14.72860 -14.37701 -13.68755 -13.57500 -12.94136 -12.76675 -12.31749 -12.05181 -11.89526 -11.58400 -11.05283 -11.02790 -10.43458 -10.01754 -9.80176 -9.00840 -8.83835 -8.61593 -7.91151 -6.26078 -4.41032 2.96836 3.14516 3.21937 3.27308 3.30730 4.03797 4.14234 4.28084 5.04940 5.47966 5.76335 5.82535 5.96229 6.04243 6.07242 6.26554 6.51401 6.74864 6.87750 7.33169 7.60904 7.78466 8.15526 8.56136 8.80284 9.12715 9.26432 10.76673 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.040690 B = 0.014676 C = 0.011968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.972083 B = 1907.361239 C = 2339.013290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.597 5.597 3 C 0.516 3.484 4 O -0.451 6.451 5 C 0.234 3.766 6 H 0.080 0.920 7 C -0.547 4.547 8 H 0.074 0.926 9 C 0.072 3.928 10 N -0.841 5.841 11 Si 0.906 3.094 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.279 1.279 15 N -0.619 5.619 16 C 0.130 3.870 17 C 0.699 3.301 18 O -0.591 6.591 19 H 0.083 0.917 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.269 0.731 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -4.669 0.904 4.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.345 5.345 3 C 0.305 3.695 4 O -0.317 6.317 5 C 0.129 3.871 6 H 0.097 0.903 7 C -0.584 4.584 8 H 0.093 0.907 9 C -0.138 4.138 10 N -0.473 5.473 11 Si 0.733 3.267 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.205 1.205 15 N -0.356 5.356 16 C -0.013 4.013 17 C 0.401 3.599 18 O -0.471 6.471 19 H 0.102 0.898 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.083 0.917 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.224 -4.432 0.976 4.701 hybrid contribution 0.313 0.493 -0.854 1.034 sum -0.911 -3.940 0.122 4.046 Atomic orbital electron populations 1.21564 0.78005 1.03357 1.02132 1.46721 1.08196 1.09311 1.70279 1.22369 0.89648 0.84128 0.73399 1.90673 1.78735 1.17862 1.44441 1.19796 0.91187 0.74828 1.01280 0.90300 1.20857 1.39325 0.92778 1.05446 0.90745 1.25065 0.94981 0.96493 0.97218 1.70049 1.41179 1.02548 1.33531 0.86308 0.79220 0.78948 0.82270 1.19456 1.20661 1.20480 1.47682 1.04118 1.09141 1.74616 1.21219 0.87732 0.90632 1.01673 1.15858 0.82539 0.83830 0.77645 1.90821 1.76137 1.21051 1.59071 0.89810 0.91717 0.91684 0.92117 0.90931 0.91733 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.88 59.85 0.65 2.24 15 2 N -0.60 -13.10 3.00 -128.17 -0.39 -13.49 15 3 C 0.52 12.84 7.45 -10.56 -0.08 12.76 15 4 O -0.45 -12.36 16.00 5.60 0.09 -12.27 15 5 C 0.23 5.70 3.32 -69.36 -0.23 5.47 15 6 H 0.08 1.98 8.14 -51.92 -0.42 1.55 15 7 C -0.55 -14.17 8.68 -34.44 -0.30 -14.47 15 8 H 0.07 1.90 7.73 -52.48 -0.41 1.50 15 9 C 0.07 1.90 5.32 -17.82 -0.09 1.80 15 10 N -0.84 -23.35 11.40 55.43 0.63 -22.71 15 11 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 15 12 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 15 N -0.62 -13.36 3.13 -181.61 -0.57 -13.93 15 16 C 0.13 2.20 11.14 59.85 0.67 2.87 15 17 C 0.70 15.70 8.31 -88.03 -0.73 14.97 15 18 O -0.59 -13.84 16.67 5.33 0.09 -13.76 15 19 H 0.08 1.34 7.45 -51.93 -0.39 0.95 15 20 H 0.06 1.01 8.14 -51.93 -0.42 0.59 15 21 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 22 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 23 H 0.07 1.15 7.67 -51.93 -0.40 0.75 15 24 H 0.06 1.06 8.06 -51.93 -0.42 0.64 15 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 15 LS Contribution 227.94 15.07 3.44 3.44 Total: -1.00 -30.94 227.94 -4.28 -35.22 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -2.43 Total: -3.43 kcal Atomic # 6 Polarization: 25.76 SS G_CDS: -0.12 Total: 25.64 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.32 Total: -50.13 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: 0.18 Total: -26.03 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -30.94 -4.28 -35.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213897911.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.963 kcal (2) G-P(sol) polarization free energy of solvation -30.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds