Wall clock time and date at job start Mon Mar 30 2020 02:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31016 * 125.17398 * 2 1 4 4 C 1.33023 * 109.97567 * 179.97438 * 3 2 1 5 5 C 1.39620 * 107.46276 * 359.76542 * 4 3 2 6 6 C 1.40063 * 127.05687 * 180.26046 * 5 4 3 7 7 H 1.07999 * 119.99681 * 180.14073 * 6 5 4 8 8 C 1.40069 * 120.00159 * 0.13186 * 6 5 4 9 9 N 1.30850 * 120.00164 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99968 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46571 * 90.00695 * 10 8 6 12 12 H 1.48498 * 109.47287 * 210.00319 * 10 8 6 13 13 H 1.48492 * 109.47136 * 330.00829 * 10 8 6 14 14 N 1.35073 * 125.17954 * 179.97438 * 2 1 3 15 15 C 1.46505 * 126.48199 * 359.97438 * 14 2 1 16 16 C 1.52997 * 109.47212 * 90.02628 * 15 14 2 17 17 F 1.39897 * 109.47422 * 179.97438 * 16 15 14 18 18 H 1.09004 * 109.47091 * 270.01606 * 1 2 3 19 19 H 1.08993 * 109.47486 * 30.01938 * 1 2 3 20 20 H 1.09005 * 109.47379 * 150.01958 * 1 2 3 21 21 H 1.08000 * 126.26240 * 180.02562 * 4 3 2 22 22 H 0.97000 * 120.00259 * 179.97438 * 9 8 6 23 23 H 1.09002 * 109.47068 * 210.02688 * 15 14 2 24 24 H 1.09001 * 109.47372 * 330.02775 * 15 14 2 25 25 H 1.09002 * 109.47153 * 300.00008 * 16 15 14 26 26 H 1.08998 * 109.47533 * 59.99637 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2617 1.0709 0.0000 4 6 3.5454 0.7222 0.0006 5 6 3.6006 -0.6729 0.0064 6 6 4.7508 -1.4721 0.0140 7 1 4.6606 -2.5483 0.0157 8 6 6.0181 -0.8755 0.0193 9 7 6.1275 0.4284 0.0176 10 14 7.5522 -1.9415 0.0302 11 1 7.9661 -2.2273 -1.3671 12 1 8.6468 -1.2265 0.7343 13 1 7.2630 -3.2179 0.7317 14 7 2.2852 -1.1040 0.0005 15 6 1.8243 -2.4947 0.0016 16 6 1.6639 -2.9800 -1.4404 17 9 1.2243 -4.3081 -1.4394 18 1 -0.3633 0.0003 1.0277 19 1 -0.3634 0.8897 -0.5141 20 1 -0.3634 -0.8902 -0.5135 21 1 4.3902 1.3951 0.0011 22 1 7.0051 0.8415 0.0216 23 1 2.5547 -3.1191 0.5161 24 1 0.8651 -2.5591 0.5154 25 1 0.9335 -2.3555 -1.9549 26 1 2.6230 -2.9155 -1.9543 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213899437.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:24 Heat of formation + Delta-G solvation = -30.985811 kcal Electronic energy + Delta-G solvation = -12518.317889 eV Core-core repulsion = 10124.905537 eV Total energy + Delta-G solvation = -2393.412352 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.71391 -41.94242 -35.66478 -35.16591 -32.09112 -30.11101 -28.97883 -25.48318 -24.32418 -21.94482 -20.14597 -19.01237 -17.58591 -17.16872 -16.80326 -16.34746 -15.85612 -15.08232 -14.91936 -14.40145 -14.01742 -13.45936 -13.32866 -13.04084 -12.91150 -12.70218 -12.51536 -12.38201 -11.97772 -11.78348 -11.24237 -10.23735 -10.07569 -8.88515 -8.53721 -6.27209 1.27153 1.40860 1.55449 1.79629 2.16324 2.41529 2.71413 3.33302 3.66304 3.68446 3.94526 4.15816 4.27282 4.37015 4.58147 4.83398 4.88960 5.06185 5.17219 5.18708 5.66566 5.82004 5.96320 6.50984 6.84948 6.97235 7.20888 7.97162 8.43565 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.031502 B = 0.013594 C = 0.009809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.613589 B = 2059.190056 C = 2853.748487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C 0.086 3.914 3 N -0.518 5.518 4 C -0.182 4.182 5 C 0.156 3.844 6 C -0.470 4.470 7 H 0.081 0.919 8 C 0.026 3.974 9 N -0.833 5.833 10 Si 1.001 2.999 11 H -0.263 1.263 12 H -0.270 1.270 13 H -0.257 1.257 14 N -0.495 5.495 15 C 0.093 3.907 16 C 0.060 3.940 17 F -0.215 7.215 18 H 0.073 0.927 19 H 0.077 0.923 20 H 0.082 0.918 21 H 0.162 0.838 22 H 0.286 0.714 23 H 0.086 0.914 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.860 -7.480 -1.125 8.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.169 4.169 3 N -0.238 5.238 4 C -0.328 4.328 5 C 0.045 3.955 6 C -0.504 4.504 7 H 0.099 0.901 8 C -0.188 4.188 9 N -0.461 5.461 10 Si 0.822 3.178 11 H -0.188 1.188 12 H -0.194 1.194 13 H -0.180 1.180 14 N -0.188 5.188 15 C -0.031 4.031 16 C 0.004 3.996 17 F -0.196 7.196 18 H 0.092 0.908 19 H 0.096 0.904 20 H 0.101 0.899 21 H 0.178 0.822 22 H 0.096 0.904 23 H 0.104 0.896 24 H 0.131 0.869 25 H 0.109 0.891 26 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.088 -6.589 -1.118 8.400 hybrid contribution 1.205 -0.844 0.043 1.471 sum -3.884 -7.433 -1.075 8.455 Atomic orbital electron populations 1.19957 0.83653 1.03434 1.02802 1.23299 0.96041 0.81611 1.15995 1.69398 1.04535 1.30471 1.19356 1.23187 0.92397 0.93768 1.23419 1.19261 0.83095 0.94100 0.99051 1.18716 0.89343 0.94000 1.48371 0.90120 1.26732 1.03541 0.96498 0.92016 1.69737 1.26921 1.12025 1.37387 0.84904 0.75369 0.78207 0.79349 1.18765 1.19448 1.18023 1.44946 1.05921 1.05790 1.62191 1.22038 1.02631 0.80926 0.97517 1.22212 1.01525 0.77964 0.97921 1.92739 1.91515 1.37694 1.97643 0.90849 0.90427 0.89889 0.82153 0.90364 0.89598 0.86892 0.89076 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.27 9.96 71.24 0.71 -0.56 15 2 C 0.09 3.97 7.87 137.97 1.09 5.06 15 3 N -0.52 -28.65 11.18 -184.80 -2.07 -30.72 15 4 C -0.18 -10.82 10.88 84.85 0.92 -9.90 15 5 C 0.16 8.60 6.74 38.88 0.26 8.86 15 6 C -0.47 -24.81 9.05 23.16 0.21 -24.60 15 7 H 0.08 3.94 7.30 -2.91 -0.02 3.91 15 8 C 0.03 1.30 5.50 85.28 0.47 1.77 15 9 N -0.83 -44.84 10.35 21.86 0.23 -44.62 15 10 Si 1.00 38.07 29.56 68.60 2.03 40.10 15 11 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 12 H -0.27 -9.89 7.11 99.48 0.71 -9.18 15 13 H -0.26 -9.33 7.11 99.48 0.71 -8.62 15 14 N -0.49 -22.63 2.79 -505.03 -1.41 -24.04 15 15 C 0.09 3.17 6.00 86.38 0.52 3.69 15 16 C 0.06 1.83 7.88 71.98 0.57 2.39 15 17 F -0.21 -6.32 17.36 44.97 0.78 -5.54 15 18 H 0.07 2.10 8.14 -2.39 -0.02 2.08 15 19 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 20 H 0.08 2.10 7.66 -2.38 -0.02 2.08 15 21 H 0.16 10.14 5.78 -2.91 -0.02 10.12 15 22 H 0.29 13.91 8.30 -92.71 -0.77 13.14 15 23 H 0.09 3.00 7.49 -2.39 -0.02 2.99 15 24 H 0.11 3.14 7.62 -2.39 -0.02 3.12 15 25 H 0.09 2.51 8.14 -2.39 -0.02 2.49 15 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 Total: -1.00 -65.71 233.15 5.48 -60.23 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 1.18 Total: 17.88 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.74 Total: -13.29 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -3.25 Total: -99.37 kcal Atomic # 9 Polarization: -6.32 SS G_CDS: 0.78 Total: -5.54 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.10 kcal Total: -65.71 5.48 -60.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213899437.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.240 kcal (2) G-P(sol) polarization free energy of solvation -65.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds