Wall clock time and date at job start Mon Mar 30 2020 02:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86806 * 119.99833 * 2 1 4 4 H 1.48508 * 109.46668 * 239.99823 * 3 2 1 5 5 H 1.48496 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46969 * 119.99995 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47227 * 59.99865 * 9 7 2 11 11 O 1.20821 * 120.00365 * 119.99866 * 10 9 7 12 12 O 1.34231 * 120.00154 * 299.99809 * 10 9 7 13 13 C 1.52997 * 109.47084 * 299.99650 * 9 7 2 14 14 C 1.52999 * 109.47592 * 300.00286 * 13 9 7 15 15 C 1.53006 * 109.46626 * 300.00035 * 14 13 9 16 16 C 1.52997 * 109.47164 * 59.99702 * 15 14 13 17 17 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 18 18 H 0.97007 * 119.99867 * 0.02562 * 1 2 3 19 19 H 0.96694 * 117.00513 * 179.97438 * 12 10 9 20 20 H 1.09000 * 109.47140 * 179.97438 * 13 9 7 21 21 H 1.09002 * 109.47045 * 60.00033 * 13 9 7 22 22 H 1.08993 * 109.47839 * 180.02562 * 14 13 9 23 23 H 1.09000 * 109.47160 * 59.99666 * 14 13 9 24 24 H 1.09001 * 109.46998 * 179.97438 * 15 14 13 25 25 H 1.09000 * 109.47050 * 299.99699 * 15 14 13 26 26 H 1.09000 * 109.47140 * 60.00051 * 16 15 14 27 27 H 1.09001 * 109.47230 * 179.97438 * 16 15 14 28 28 H 1.08992 * 109.47534 * 300.00299 * 17 9 7 29 29 H 1.08996 * 109.47134 * 179.97438 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 0.3851 -2.5792 -1.2302 11 8 0.5465 -3.4745 -2.0253 12 8 -0.5657 -1.6559 -1.4432 13 6 0.3710 -2.5799 1.2495 14 6 1.2501 -2.4986 2.4990 15 6 2.2444 -3.6615 2.4996 16 6 3.1244 -3.5808 1.2507 17 6 2.2452 -3.6620 0.0005 18 1 -0.4850 0.8401 -0.0004 19 1 -1.0957 -1.7487 -2.2466 20 1 -0.1743 -3.5237 1.2493 21 1 -0.3373 -1.7514 1.2491 22 1 0.6233 -2.5566 3.3888 23 1 1.7951 -1.5546 2.4990 24 1 2.8710 -3.6034 3.3896 25 1 1.6994 -4.6055 2.4996 26 1 3.6694 -2.6368 1.2507 27 1 3.8330 -4.4090 1.2513 28 1 2.8719 -3.6043 -0.8893 29 1 1.7003 -4.6060 0.0010 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220970512.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:57 Heat of formation + Delta-G solvation = -105.570796 kcal Electronic energy + Delta-G solvation = -13670.441787 eV Core-core repulsion = 11364.962742 eV Total energy + Delta-G solvation = -2305.479046 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.15958 -36.91775 -34.47095 -32.69316 -29.95988 -29.49995 -25.03777 -22.89089 -21.51448 -19.82592 -18.64133 -16.62514 -15.88012 -15.17695 -14.64757 -13.93639 -13.57142 -13.21817 -12.91936 -12.31910 -11.64108 -11.38535 -11.18112 -11.03397 -10.93125 -10.65253 -10.22178 -10.15650 -9.89292 -9.75049 -9.56482 -9.09124 -8.93007 -8.78157 -8.25085 -6.01156 -4.18036 3.27173 3.32039 3.34883 3.86882 4.35955 4.80256 5.23505 5.74605 5.77427 5.84745 6.36218 6.47203 6.52994 6.54730 6.57083 6.63237 6.76486 6.91206 7.10833 7.16262 7.24284 7.39594 7.50069 7.76178 7.97415 8.01216 8.21158 8.76275 9.45214 9.60454 10.93522 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.029281 B = 0.019655 C = 0.014838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.035954 B = 1424.233482 C = 1886.647829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.066 0.934 9 C 0.083 3.917 10 C 0.490 3.510 11 O -0.587 6.587 12 O -0.445 6.445 13 C -0.102 4.102 14 C -0.101 4.101 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.089 4.089 18 H 0.262 0.738 19 H 0.347 0.653 20 H 0.018 0.982 21 H 0.100 0.900 22 H 0.037 0.963 23 H 0.074 0.926 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.015 -2.070 3.064 3.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.081 3.919 10 C 0.336 3.664 11 O -0.483 6.483 12 O -0.246 6.246 13 C -0.140 4.140 14 C -0.139 4.139 15 C -0.151 4.151 16 C -0.145 4.145 17 C -0.127 4.127 18 H 0.073 0.927 19 H 0.200 0.800 20 H 0.037 0.963 21 H 0.118 0.882 22 H 0.055 0.945 23 H 0.093 0.907 24 H 0.064 0.936 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 1.105 -2.107 3.243 4.022 hybrid contribution 0.111 0.829 -0.727 1.108 sum 1.215 -1.278 2.516 3.073 Atomic orbital electron populations 1.69802 1.05298 1.26283 1.44878 1.25029 0.94947 0.99082 0.95011 0.86672 0.79710 0.83078 0.78699 1.20396 1.21229 1.20083 1.20798 0.92910 0.88443 1.53142 0.91594 1.18002 0.90783 0.95572 0.87514 1.25222 0.76982 0.75833 0.88327 1.90489 1.70810 1.37372 1.49611 1.85609 1.44865 1.50760 1.43400 1.21517 0.98498 1.00218 0.93805 1.21352 0.97077 0.98799 0.96661 1.21506 0.97887 0.98685 0.97058 1.21453 0.97348 1.01019 0.94719 1.21319 0.97359 0.97055 0.96939 0.92695 0.80048 0.96328 0.88188 0.94466 0.90749 0.93612 0.93516 0.91049 0.94047 0.92870 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.36 8.04 55.43 0.45 -20.92 15 2 C 0.07 1.67 5.08 -17.82 -0.09 1.58 15 3 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.46 7.11 56.52 0.40 -6.06 15 6 H -0.28 -6.15 7.11 56.52 0.40 -5.74 15 7 C -0.52 -13.18 6.05 -34.44 -0.21 -13.39 15 8 H 0.07 1.68 6.71 -52.49 -0.35 1.33 15 9 C 0.08 2.01 0.48 -156.81 -0.08 1.94 15 10 C 0.49 12.55 6.89 36.01 0.25 12.80 15 11 O -0.59 -15.77 16.74 -18.75 -0.31 -16.08 15 12 O -0.44 -10.75 9.75 -39.26 -0.38 -11.13 15 13 C -0.10 -2.34 4.45 -26.73 -0.12 -2.46 15 14 C -0.10 -2.04 5.70 -26.73 -0.15 -2.19 15 15 C -0.11 -2.05 5.92 -26.73 -0.16 -2.20 15 16 C -0.11 -2.06 5.70 -26.71 -0.15 -2.21 15 17 C -0.09 -1.97 3.99 -26.71 -0.11 -2.08 15 18 H 0.26 6.57 8.31 -40.82 -0.34 6.23 15 19 H 0.35 6.84 9.10 45.56 0.41 7.26 15 20 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 21 H 0.10 2.50 6.04 -51.93 -0.31 2.19 15 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 23 H 0.07 1.62 7.22 -51.93 -0.37 1.24 15 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.07 1.42 6.62 -51.93 -0.34 1.08 15 27 H 0.04 0.69 8.14 -51.93 -0.42 0.27 15 28 H 0.05 1.21 8.10 -51.93 -0.42 0.79 15 29 H 0.04 0.93 8.10 -51.93 -0.42 0.51 15 LS Contribution 230.54 15.07 3.47 3.47 Total: -1.00 -28.09 230.54 -5.67 -33.76 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -3.06 Total: 4.01 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -0.81 Total: -8.21 kcal Atomic # 7 Polarization: -21.36 SS G_CDS: 0.45 Total: -20.92 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.70 Total: -27.21 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -28.09 -5.67 -33.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220970512.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.809 kcal (2) G-P(sol) polarization free energy of solvation -28.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds