Wall clock time and date at job start Mon Mar 30 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47292 * 2 1 4 4 C 1.50707 * 109.46724 * 119.99248 * 2 1 3 5 5 H 1.07997 * 119.99485 * 120.00530 * 4 2 1 6 6 C 1.37873 * 120.00378 * 300.00209 * 4 2 1 7 7 N 1.31516 * 120.00029 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47276 * 89.99884 * 8 6 4 10 10 H 1.48496 * 109.47537 * 210.00600 * 8 6 4 11 11 H 1.48505 * 109.46975 * 330.00361 * 8 6 4 12 12 N 1.46497 * 109.47771 * 239.99728 * 2 1 3 13 13 C 1.34762 * 124.17919 * 119.99883 * 12 2 1 14 14 O 1.21233 * 127.15760 * 359.93248 * 13 12 2 15 15 C 1.51585 * 105.68548 * 179.97438 * 13 12 2 16 16 N 1.47317 * 103.72957 * 359.92559 * 15 13 12 17 17 C 1.33792 * 124.17388 * 299.96306 * 12 2 1 18 18 O 1.21541 * 123.77082 * 0.02562 * 17 12 2 19 19 H 1.09004 * 109.46798 * 60.00617 * 1 2 3 20 20 H 1.09003 * 109.47292 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.47925 * 300.00656 * 1 2 3 22 22 H 0.97002 * 120.00235 * 180.02562 * 7 6 4 23 23 H 1.09002 * 110.59975 * 118.52792 * 15 13 12 24 24 H 1.08999 * 110.59804 * 241.31930 * 15 13 12 25 25 H 0.96995 * 126.68986 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5883 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9426 0.8298 2.6034 8 14 2.3210 -1.1200 4.0081 9 1 3.6293 -0.5456 4.4126 10 1 1.3427 -0.9490 5.1121 11 1 2.4856 -2.5659 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.7964 -0.1184 -2.1360 14 8 3.2075 1.0219 -2.1514 15 6 3.0496 -1.1970 -3.1706 16 7 2.3186 -2.3634 -2.6458 17 6 1.7478 -1.9675 -1.4897 18 8 1.0649 -2.6912 -0.7918 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3635 0.5139 0.8899 22 1 0.7085 1.1616 3.4844 23 1 2.6511 -0.8993 -4.1404 24 1 4.1152 -1.4141 -3.2453 25 1 2.2594 -3.2416 -3.0533 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225157227.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:29 Heat of formation + Delta-G solvation = -68.924596 kcal Electronic energy + Delta-G solvation = -12935.543048 eV Core-core repulsion = 10528.112757 eV Total energy + Delta-G solvation = -2407.430290 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.02385 -39.39052 -36.93138 -36.82734 -34.34205 -31.20534 -28.38958 -27.39542 -24.51152 -23.27357 -21.00737 -18.87926 -18.72937 -17.63471 -17.15332 -16.83912 -16.12059 -15.75692 -15.06018 -14.87882 -14.73382 -14.21042 -13.67388 -13.25468 -12.96662 -12.82232 -12.45026 -12.26187 -11.71230 -11.40207 -11.01237 -10.59500 -10.42815 -10.19016 -8.23162 -6.36867 0.80150 1.37500 1.39828 1.49293 1.58788 2.23592 2.38746 2.53933 3.06210 3.26708 4.19752 4.40836 4.58126 4.65206 4.79813 4.84332 5.01996 5.37283 5.58486 5.79170 5.98038 6.08447 6.52840 6.57225 6.69293 7.27064 7.43598 8.82746 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.043887 B = 0.012814 C = 0.011925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.850836 B = 2184.586467 C = 2347.491750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.035 0.965 4 C -0.535 4.535 5 H 0.047 0.953 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.967 3.033 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.276 1.276 12 N -0.572 5.572 13 C 0.499 3.501 14 O -0.524 6.524 15 C 0.083 3.917 16 N -0.715 5.715 17 C 0.690 3.310 18 O -0.577 6.577 19 H 0.029 0.971 20 H 0.038 0.962 21 H 0.078 0.922 22 H 0.269 0.731 23 H 0.161 0.839 24 H 0.156 0.844 25 H 0.452 0.548 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -5.076 -11.326 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.171 3.829 3 H 0.052 0.948 4 C -0.574 4.574 5 H 0.066 0.934 6 C -0.182 4.182 7 N -0.552 5.552 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.199 1.199 11 H -0.201 1.201 12 N -0.316 5.316 13 C 0.289 3.711 14 O -0.398 6.398 15 C -0.043 4.043 16 N -0.383 5.383 17 C 0.391 3.609 18 O -0.452 6.452 19 H 0.048 0.952 20 H 0.057 0.943 21 H 0.097 0.903 22 H 0.078 0.922 23 H 0.178 0.822 24 H 0.173 0.827 25 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges 3.605 -4.662 -10.743 12.253 hybrid contribution 0.041 -0.478 0.924 1.041 sum 3.646 -5.139 -9.819 11.667 Atomic orbital electron populations 1.21908 0.96597 1.00344 1.00741 1.18757 0.92400 0.91730 0.79967 0.94757 1.21316 1.32353 1.12480 0.91214 0.93447 1.25652 0.94989 0.95710 1.01816 1.69960 1.36773 1.23595 1.24844 0.85427 0.78449 0.78563 0.78441 1.19468 1.19925 1.20140 1.46956 1.47338 1.12991 1.24318 1.21929 0.76397 0.89028 0.83760 1.90722 1.52210 1.19446 1.77445 1.22620 1.02297 0.81962 0.97410 1.45404 1.54372 1.15856 1.22643 1.16245 0.80420 0.81590 0.82675 1.90920 1.42970 1.56897 1.54461 0.95212 0.94270 0.90327 0.92195 0.82165 0.82707 0.70079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.14 8.97 71.98 0.65 -6.49 15 2 C 0.27 14.60 2.76 44.25 0.12 14.73 15 3 H 0.03 2.03 7.64 -2.39 -0.02 2.01 15 4 C -0.54 -31.09 7.99 25.60 0.20 -30.89 15 5 H 0.05 2.82 7.68 -2.91 -0.02 2.79 15 6 C 0.02 1.04 5.30 84.65 0.45 1.49 15 7 N -0.91 -53.10 11.32 21.45 0.24 -52.86 15 8 Si 0.97 45.27 29.54 68.60 2.03 47.30 15 9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 15 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 15 12 N -0.57 -25.16 2.50 -754.16 -1.89 -27.05 15 13 C 0.50 18.06 8.32 87.94 0.73 18.79 15 14 O -0.52 -22.32 17.51 -2.88 -0.05 -22.37 15 15 C 0.08 1.63 7.96 85.76 0.68 2.32 15 16 N -0.71 -17.40 6.61 -479.80 -3.17 -20.57 15 17 C 0.69 27.67 7.95 179.33 1.43 29.10 15 18 O -0.58 -28.29 15.74 -3.85 -0.06 -28.35 15 19 H 0.03 1.36 8.14 -2.38 -0.02 1.34 15 20 H 0.04 2.08 6.70 -2.39 -0.02 2.06 15 21 H 0.08 4.38 6.07 -2.39 -0.01 4.37 15 22 H 0.27 14.68 8.31 -92.71 -0.77 13.91 15 23 H 0.16 1.83 8.14 -2.39 -0.02 1.81 15 24 H 0.16 1.97 8.14 -2.39 -0.02 1.95 15 25 H 0.45 7.56 8.96 -92.71 -0.83 6.73 15 Total: -1.00 -74.93 223.57 1.75 -73.18 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 0.39 Total: 1.67 kcal Atomic # 6 Polarization: 24.79 SS G_CDS: 4.26 Total: 29.05 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -4.81 Total: -100.47 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.11 Total: -50.73 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -74.93 1.75 -73.18 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225157227.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.253 kcal (2) G-P(sol) polarization free energy of solvation -74.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds