Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46701 * 2 1 4 4 C 1.42901 * 113.99777 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47182 * 179.97438 * 4 3 2 6 6 N 1.30448 * 126.07415 * 270.02395 * 5 4 3 7 7 O 1.21280 * 110.68458 * 179.68045 * 6 5 4 8 8 C 1.34757 * 109.53299 * 0.47281 * 7 6 5 9 9 C 1.40334 * 126.79168 * 179.80147 * 8 7 6 10 10 H 1.08001 * 119.99980 * 185.79045 * 9 8 7 11 11 C 1.40461 * 120.00663 * 5.79680 * 9 8 7 12 12 N 1.30513 * 119.99441 * 6.39073 * 11 9 8 13 13 Si 1.86797 * 120.00562 * 186.39397 * 11 9 8 14 14 H 1.48501 * 109.47057 * 84.98645 * 13 11 9 15 15 H 1.48505 * 109.46749 * 324.99194 * 13 11 9 16 16 H 1.48497 * 109.47449 * 204.98718 * 13 11 9 17 17 N 1.33326 * 106.41035 * 359.53913 * 8 7 6 18 18 H 1.09004 * 109.46694 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47244 * 299.99884 * 1 2 3 20 20 H 1.09003 * 109.46875 * 60.00196 * 1 2 3 21 21 H 1.08997 * 109.47244 * 240.00116 * 2 1 3 22 22 H 1.09003 * 109.46944 * 119.99253 * 2 1 3 23 23 H 1.09006 * 109.47106 * 59.99680 * 4 3 2 24 24 H 1.09000 * 109.47517 * 300.00054 * 4 3 2 25 25 H 0.97006 * 119.99780 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9163 -0.0001 6 7 4.0175 3.6579 -1.0548 7 8 4.3128 4.7895 -0.7335 8 6 4.3433 4.8828 0.6105 9 6 4.6474 6.0250 1.3670 10 1 4.7312 5.9545 2.4414 11 6 4.8428 7.2599 0.7270 12 7 4.6200 7.3734 -0.5540 13 14 5.4217 8.7397 1.7090 14 1 6.9032 8.7184 1.8094 15 1 4.8325 8.6909 3.0713 16 1 4.9897 9.9861 1.0271 17 7 4.0216 3.6768 1.0792 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5137 0.8901 23 1 3.8340 0.9765 -0.8892 24 1 3.8333 0.9768 0.8908 25 1 4.7553 8.2262 -0.9961 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233761215.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = -4.650587 kcal Electronic energy + Delta-G solvation = -12172.268659 eV Core-core repulsion = 9767.625498 eV Total energy + Delta-G solvation = -2404.643160 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.04466 -37.66641 -34.10450 -33.69979 -31.39654 -30.30343 -26.79017 -26.18709 -22.59738 -21.62663 -20.69992 -17.74563 -16.51272 -15.79931 -15.56545 -15.40730 -14.98776 -14.05274 -13.55019 -12.92255 -12.46747 -12.10609 -11.69543 -11.49583 -11.41636 -11.18755 -10.97135 -10.50712 -10.11276 -9.93586 -9.58815 -9.31867 -8.91938 -8.31435 -7.07729 -5.00939 2.79387 2.97346 3.03041 3.13260 3.66086 3.75182 4.40084 5.04029 5.14456 5.16530 5.34506 5.43564 5.52275 5.54966 5.67974 5.82645 6.01695 6.21328 6.58143 6.86344 7.31410 7.53853 7.90655 8.10576 8.31757 8.46824 9.91872 10.35516 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.081861 B = 0.007424 C = 0.007263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.960048 B = 3770.813423 C = 3854.386091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.172 3.828 5 C 0.156 3.844 6 N -0.455 5.455 7 O 0.049 5.951 8 C 0.303 3.697 9 C -0.417 4.417 10 H 0.114 0.886 11 C 0.071 3.929 12 N -0.764 5.764 13 Si 0.937 3.063 14 H -0.263 1.263 15 H -0.257 1.257 16 H -0.273 1.273 17 N -0.604 5.604 18 H 0.067 0.933 19 H 0.063 0.937 20 H 0.062 0.938 21 H 0.046 0.954 22 H 0.047 0.953 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -5.546 1.339 6.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 O -0.299 6.299 4 C 0.094 3.906 5 C -0.118 4.118 6 N -0.184 5.184 7 O 0.000 6.000 8 C 0.112 3.888 9 C -0.455 4.455 10 H 0.132 0.868 11 C -0.154 4.154 12 N -0.391 5.391 13 Si 0.760 3.240 14 H -0.188 1.188 15 H -0.180 1.180 16 H -0.198 1.198 17 N -0.349 5.349 18 H 0.086 0.914 19 H 0.082 0.918 20 H 0.081 0.919 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.354 -5.845 0.689 6.338 hybrid contribution 0.426 0.619 0.348 0.828 sum -1.928 -5.225 1.037 5.665 Atomic orbital electron populations 1.21725 0.93991 1.01730 1.03266 1.22421 0.95512 0.84251 0.99789 1.87999 1.20831 1.25744 1.95342 1.20096 0.81128 0.88875 1.00518 1.24471 1.02898 0.97664 0.86763 1.74306 1.26200 0.93196 1.24715 1.85520 1.67632 1.22029 1.24854 1.24227 0.90895 0.93304 0.80363 1.18558 1.43478 0.88270 0.95144 0.86849 1.26202 0.92671 1.01197 0.95328 1.69641 1.31185 1.28024 1.10225 0.85834 0.79869 0.78073 0.80225 1.18751 1.18028 1.19785 1.72220 1.33125 1.02102 1.27442 0.91372 0.91824 0.91913 0.93619 0.93485 0.92144 0.91539 0.89622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.28 37.16 0.38 -1.46 15 2 C 0.06 0.82 6.66 37.16 0.25 1.07 15 3 O -0.38 -7.78 10.33 -35.23 -0.36 -8.14 15 4 C 0.17 3.56 6.56 36.01 0.24 3.80 15 5 C 0.16 4.17 7.81 -156.78 -1.22 2.95 15 6 N -0.45 -13.02 12.15 31.51 0.38 -12.64 15 7 O 0.05 1.47 9.82 15.12 0.15 1.62 15 8 C 0.30 8.91 7.79 -16.36 -0.13 8.78 15 9 C -0.42 -11.24 9.47 -37.96 -0.36 -11.60 15 10 H 0.11 2.87 7.86 -52.49 -0.41 2.45 15 11 C 0.07 1.74 5.49 -17.28 -0.09 1.65 15 12 N -0.76 -19.73 12.12 55.57 0.67 -19.06 15 13 Si 0.94 17.74 29.57 -169.99 -5.03 12.71 15 14 H -0.26 -4.86 7.11 56.52 0.40 -4.46 15 15 H -0.26 -4.76 7.11 56.52 0.40 -4.35 15 16 H -0.27 -4.99 7.11 56.52 0.40 -4.58 15 17 N -0.60 -17.38 11.61 -11.51 -0.13 -17.52 15 18 H 0.07 0.63 8.14 -51.93 -0.42 0.21 15 19 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 15 23 H 0.06 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 25 H 0.29 6.66 8.29 -40.82 -0.34 6.33 15 LS Contribution 234.12 15.07 3.53 3.53 Total: -1.00 -31.87 234.12 -4.24 -36.10 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -2.51 Total: -1.80 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -0.94 Total: 5.19 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.92 Total: -49.22 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.22 Total: -6.52 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -31.87 -4.24 -36.10 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233761215.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.454 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds