Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42903 * 109.46701 * 2 1 4 4 C 1.42901 * 113.99777 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47182 * 179.97438 * 4 3 2 6 6 N 1.30448 * 126.07415 * 270.02395 * 5 4 3 7 7 O 1.21280 * 110.68458 * 179.68045 * 6 5 4 8 8 C 1.34757 * 109.53299 * 0.47281 * 7 6 5 9 9 C 1.40334 * 126.79168 * 179.80147 * 8 7 6 10 10 H 1.08001 * 119.99980 * 185.79045 * 9 8 7 11 11 C 1.40461 * 120.00663 * 5.79680 * 9 8 7 12 12 N 1.30513 * 119.99441 * 6.39073 * 11 9 8 13 13 Si 1.86797 * 120.00562 * 186.39397 * 11 9 8 14 14 H 1.48501 * 109.47057 * 84.98645 * 13 11 9 15 15 H 1.48505 * 109.46749 * 324.99194 * 13 11 9 16 16 H 1.48497 * 109.47449 * 204.98718 * 13 11 9 17 17 N 1.33326 * 106.41035 * 359.53913 * 8 7 6 18 18 H 1.09004 * 109.46694 * 180.02562 * 1 2 3 19 19 H 1.08997 * 109.47244 * 299.99884 * 1 2 3 20 20 H 1.09003 * 109.46875 * 60.00196 * 1 2 3 21 21 H 1.08997 * 109.47244 * 240.00116 * 2 1 3 22 22 H 1.09003 * 109.46944 * 119.99253 * 2 1 3 23 23 H 1.09006 * 109.47106 * 59.99680 * 4 3 2 24 24 H 1.09000 * 109.47517 * 300.00054 * 4 3 2 25 25 H 0.97006 * 119.99780 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9163 -0.0001 6 7 4.0175 3.6579 -1.0548 7 8 4.3128 4.7895 -0.7335 8 6 4.3433 4.8828 0.6105 9 6 4.6474 6.0250 1.3670 10 1 4.7312 5.9545 2.4414 11 6 4.8428 7.2599 0.7270 12 7 4.6200 7.3734 -0.5540 13 14 5.4217 8.7397 1.7090 14 1 6.9032 8.7184 1.8094 15 1 4.8325 8.6909 3.0713 16 1 4.9897 9.9861 1.0271 17 7 4.0216 3.6768 1.0792 18 1 -0.3633 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 1.8934 -0.5138 -0.8900 22 1 1.8933 -0.5137 0.8901 23 1 3.8340 0.9765 -0.8892 24 1 3.8333 0.9768 0.8908 25 1 4.7553 8.2262 -0.9961 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233761215.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = -29.279648 kcal Electronic energy + Delta-G solvation = -12173.336655 eV Core-core repulsion = 9767.625498 eV Total energy + Delta-G solvation = -2405.711156 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.13567 -39.10931 -36.10573 -35.70933 -32.99626 -31.93739 -28.72574 -28.02551 -23.72248 -23.69822 -22.69457 -19.71285 -18.23141 -17.48520 -17.29319 -17.24140 -16.66467 -15.80481 -15.14292 -14.31160 -13.87233 -13.61416 -13.42784 -13.10648 -13.04843 -12.44584 -12.27843 -12.16891 -11.97561 -11.89844 -11.46155 -11.08903 -10.66413 -10.40628 -8.97930 -7.12962 0.90283 1.41079 1.43219 1.61815 1.87643 2.15929 2.75931 3.03704 3.23586 3.57721 3.82720 4.12959 4.16145 4.34084 4.47507 4.67153 4.82783 4.92271 5.00891 5.23628 5.35095 5.82685 6.02153 6.17449 6.24612 6.41219 8.04227 8.22002 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.081861 B = 0.007424 C = 0.007263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.960048 B = 3770.813423 C = 3854.386091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 O -0.415 6.415 4 C 0.175 3.825 5 C 0.159 3.841 6 N -0.482 5.482 7 O 0.015 5.985 8 C 0.269 3.731 9 C -0.432 4.432 10 H 0.125 0.875 11 C 0.028 3.972 12 N -0.795 5.795 13 Si 1.025 2.975 14 H -0.252 1.252 15 H -0.248 1.248 16 H -0.259 1.259 17 N -0.632 5.632 18 H 0.104 0.896 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.918 -5.284 2.250 6.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.334 6.334 4 C 0.098 3.902 5 C -0.116 4.116 6 N -0.217 5.217 7 O -0.029 6.029 8 C 0.081 3.919 9 C -0.469 4.469 10 H 0.142 0.858 11 C -0.194 4.194 12 N -0.422 5.422 13 Si 0.841 3.159 14 H -0.176 1.176 15 H -0.171 1.171 16 H -0.182 1.182 17 N -0.378 5.378 18 H 0.123 0.877 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.102 0.898 24 H 0.105 0.895 25 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.216 -5.577 1.587 6.208 hybrid contribution 0.335 0.506 0.051 0.609 sum -1.881 -5.072 1.638 5.652 Atomic orbital electron populations 1.21779 0.92626 1.03800 1.02287 1.22822 0.96626 0.81795 1.01681 1.87941 1.20178 1.29633 1.95694 1.20243 0.82050 0.85310 1.02633 1.25497 1.00525 0.99790 0.85751 1.74232 1.28577 0.93278 1.25649 1.85451 1.69264 1.22951 1.25190 1.24873 0.91874 0.94504 0.80643 1.19172 1.42991 0.88912 0.95849 0.85754 1.27454 0.91690 1.03915 0.96356 1.69694 1.30320 1.29925 1.12229 0.84582 0.79622 0.73208 0.78477 1.17579 1.17075 1.18244 1.72208 1.34719 1.02449 1.28394 0.87726 0.92829 0.92883 0.91628 0.91563 0.89825 0.89481 0.88102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 10.28 71.98 0.74 -2.62 15 2 C 0.05 1.24 6.66 71.98 0.48 1.72 15 3 O -0.42 -16.65 10.33 -148.98 -1.54 -18.19 15 4 C 0.18 7.15 6.56 71.24 0.47 7.62 15 5 C 0.16 8.66 7.81 138.61 1.08 9.74 15 6 N -0.48 -28.44 12.15 -56.63 -0.69 -29.13 15 7 O 0.02 0.94 9.82 64.18 0.63 1.57 15 8 C 0.27 16.28 7.79 85.06 0.66 16.94 15 9 C -0.43 -23.51 9.47 23.32 0.22 -23.29 15 10 H 0.12 6.28 7.86 -2.91 -0.02 6.25 15 11 C 0.03 1.35 5.49 85.43 0.47 1.82 15 12 N -0.79 -41.14 12.12 21.91 0.27 -40.88 15 13 Si 1.03 34.72 29.57 68.60 2.03 36.74 15 14 H -0.25 -8.10 7.11 99.48 0.71 -7.39 15 15 H -0.25 -8.00 7.11 99.48 0.71 -7.30 15 16 H -0.26 -8.12 7.11 99.48 0.71 -7.42 15 17 N -0.63 -37.17 11.61 -305.23 -3.54 -40.71 15 18 H 0.10 1.60 8.14 -2.38 -0.02 1.58 15 19 H 0.05 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.05 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.07 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.07 1.51 8.14 -2.39 -0.02 1.49 15 23 H 0.08 2.96 8.14 -2.38 -0.02 2.94 15 24 H 0.09 3.12 8.14 -2.39 -0.02 3.10 15 25 H 0.31 13.80 8.29 -92.70 -0.77 13.03 15 Total: -1.00 -70.80 234.12 2.47 -68.33 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.19 Total: 10.34 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 4.12 Total: 11.93 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -3.97 Total: -110.72 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.91 Total: -16.62 kcal Atomic # 14 Polarization: 34.72 SS G_CDS: 2.03 Total: 36.74 kcal Total: -70.80 2.47 -68.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233761215.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.047 kcal (2) G-P(sol) polarization free energy of solvation -70.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds