Wall clock time and date at job start Mon Mar 30 2020 02:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46910 * 2 1 4 4 H 1.08999 * 109.87421 * 304.42684 * 3 2 1 5 5 O 1.43747 * 110.00500 * 65.51607 * 3 2 1 6 6 C 1.44382 * 106.97796 * 146.00425 * 5 3 2 7 7 C 1.55000 * 103.48945 * 319.94355 * 6 5 3 8 8 C 1.54108 * 109.87783 * 183.42127 * 3 2 1 9 9 H 1.08996 * 110.48664 * 119.58811 * 8 3 2 10 10 C 1.50704 * 110.48454 * 357.07309 * 8 3 2 11 11 O 1.21434 * 119.99930 * 269.56990 * 10 8 3 12 12 C 1.41020 * 119.99878 * 89.56829 * 10 8 3 13 13 H 1.08006 * 119.99777 * 6.29448 * 12 10 8 14 14 C 1.40454 * 120.00154 * 186.29142 * 12 10 8 15 15 N 1.30527 * 120.00374 * 184.82795 * 14 12 10 16 16 Si 1.86803 * 119.99807 * 4.82848 * 14 12 10 17 17 H 1.48500 * 109.47081 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47018 * 299.99783 * 16 14 12 19 19 H 1.48496 * 109.47250 * 60.00065 * 16 14 12 20 20 H 1.08991 * 109.46803 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46483 * 299.99777 * 1 2 3 22 22 H 1.08994 * 109.47229 * 59.99616 * 1 2 3 23 23 H 1.09005 * 109.46804 * 240.00231 * 2 1 3 24 24 H 1.08994 * 109.47229 * 120.00383 * 2 1 3 25 25 H 1.09002 * 110.61710 * 78.43995 * 6 5 3 26 26 H 1.08998 * 110.62062 * 201.44067 * 6 5 3 27 27 H 1.09003 * 110.90582 * 278.82520 * 7 6 5 28 28 H 1.08999 * 110.91005 * 155.22521 * 7 6 5 29 29 H 0.96997 * 119.99825 * 354.90892 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6171 1.9850 -0.8455 5 8 1.6761 2.0927 1.2293 6 6 2.7435 3.0094 1.5534 7 6 4.0242 2.2182 1.1842 8 6 3.5786 1.4543 -0.0865 9 1 3.9062 1.9790 -0.9840 10 6 4.1185 0.0474 -0.0727 11 8 4.4021 -0.4838 0.9818 12 6 4.2943 -0.6522 -1.2845 13 1 4.1394 -0.1476 -2.2267 14 6 4.6707 -2.0053 -1.2660 15 7 4.9251 -2.6273 -2.3849 16 14 4.8073 -2.9146 0.3601 17 1 5.2183 -4.3192 0.1087 18 1 5.8215 -2.2483 1.2161 19 1 3.4915 -2.8989 1.0480 20 1 -0.3632 -1.0276 -0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 2.6662 3.9161 0.9533 26 1 2.7337 3.2495 2.6165 27 1 4.2957 1.5244 1.9799 28 1 4.8491 2.8951 0.9620 29 1 4.7832 -2.1779 -3.2327 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234113804.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:45 Heat of formation + Delta-G solvation = -119.759816 kcal Electronic energy + Delta-G solvation = -13317.900874 eV Core-core repulsion = 11011.806546 eV Total energy + Delta-G solvation = -2306.094328 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.50351 -36.82073 -33.17580 -32.94929 -31.40267 -28.22855 -26.51384 -23.30573 -21.63058 -20.89443 -18.74438 -17.31131 -15.98396 -15.36607 -15.00459 -14.48891 -13.69587 -13.30534 -13.18151 -12.92981 -12.68939 -12.04018 -11.70449 -11.19180 -10.98610 -10.80062 -10.45258 -10.27603 -10.23298 -10.17268 -9.82470 -9.37174 -9.19541 -9.09828 -7.77540 -7.00449 -5.23612 3.33461 3.61366 3.98143 4.04347 4.38362 4.43631 5.05933 5.27539 5.37466 5.49511 5.60763 5.69129 5.80425 5.89378 6.07034 6.15560 6.20429 6.31678 6.46636 6.51023 6.63400 6.77835 6.82667 7.08031 7.44341 7.52346 7.80271 8.28175 8.58932 9.83454 10.05934 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.039439 B = 0.014180 C = 0.012740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.788902 B = 1974.152881 C = 2197.288971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.101 3.899 4 H 0.059 0.941 5 O -0.377 6.377 6 C 0.048 3.952 7 C -0.145 4.145 8 C -0.153 4.153 9 H 0.079 0.921 10 C 0.372 3.628 11 O -0.581 6.581 12 C -0.577 4.577 13 H 0.071 0.929 14 C 0.055 3.945 15 N -0.805 5.805 16 Si 1.129 2.871 17 H -0.324 1.324 18 H -0.280 1.280 19 H -0.286 1.286 20 H 0.049 0.951 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.067 0.933 29 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 6.968 2.692 8.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.043 3.957 4 H 0.077 0.923 5 O -0.296 6.296 6 C -0.029 4.029 7 C -0.183 4.183 8 C -0.173 4.173 9 H 0.097 0.903 10 C 0.275 3.725 11 O -0.481 6.481 12 C -0.607 4.607 13 H 0.089 0.911 14 C -0.166 4.166 15 N -0.431 5.431 16 Si 0.962 3.038 17 H -0.257 1.257 18 H -0.207 1.207 19 H -0.213 1.213 20 H 0.068 0.932 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.111 0.889 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.206 5.358 3.837 7.818 hybrid contribution -0.258 1.912 -1.355 2.357 sum -4.463 7.270 2.482 8.884 Atomic orbital electron populations 1.21713 0.96507 1.00846 1.01097 1.21914 0.95174 0.95002 1.04926 1.22510 0.92973 0.93937 0.86274 0.92339 1.88814 1.42742 1.56357 1.41714 1.23467 0.86859 0.92344 1.00224 1.23099 0.97135 0.98869 0.99199 1.22946 0.95626 1.00576 0.98162 0.90285 1.19377 0.77396 0.86275 0.89469 1.89884 1.55463 1.67723 1.35012 1.21891 1.45104 0.98402 0.95334 0.91071 1.27618 0.88032 0.95616 1.05329 1.70567 1.31419 1.41389 0.99730 0.82317 0.79110 0.71097 0.71299 1.25652 1.20682 1.21292 0.93206 0.92794 0.93573 0.88856 0.90577 0.93164 0.89736 0.88824 0.91397 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.82 37.16 0.36 -2.10 15 2 C -0.13 -2.76 4.48 -26.73 -0.12 -2.88 15 3 C 0.10 1.99 3.42 -26.15 -0.09 1.91 15 4 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 5 O -0.38 -7.33 10.78 -35.23 -0.38 -7.71 15 6 C 0.05 0.78 7.72 38.21 0.29 1.08 15 7 C -0.15 -2.73 6.65 -24.72 -0.16 -2.89 15 8 C -0.15 -3.25 3.32 -90.24 -0.30 -3.55 15 9 H 0.08 1.58 8.13 -51.93 -0.42 1.15 15 10 C 0.37 9.52 3.97 -33.25 -0.13 9.39 15 11 O -0.58 -16.16 10.75 5.42 0.06 -16.10 15 12 C -0.58 -15.52 8.29 -37.69 -0.31 -15.83 15 13 H 0.07 1.90 8.06 -52.48 -0.42 1.48 15 14 C 0.06 1.53 5.53 -17.27 -0.10 1.43 15 15 N -0.81 -22.20 13.64 55.57 0.76 -21.44 15 16 Si 1.13 29.07 25.97 -169.99 -4.41 24.66 15 17 H -0.32 -8.07 7.11 56.52 0.40 -7.67 15 18 H -0.28 -7.44 6.77 56.52 0.38 -7.05 15 19 H -0.29 -7.34 7.11 56.52 0.40 -6.93 15 20 H 0.05 0.79 8.14 -51.93 -0.42 0.37 15 21 H 0.05 0.90 7.86 -51.93 -0.41 0.50 15 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.09 2.08 6.37 -51.93 -0.33 1.75 15 24 H 0.08 1.78 7.31 -51.93 -0.38 1.40 15 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 15 26 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 27 H 0.09 1.97 6.85 -51.93 -0.36 1.62 15 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 15 29 H 0.28 7.42 8.72 -40.82 -0.36 7.06 15 LS Contribution 237.45 15.07 3.58 3.58 Total: -1.00 -29.13 237.45 -4.98 -34.11 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -4.03 Total: -3.65 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -0.55 Total: -13.45 kcal Atomic # 7 Polarization: -22.20 SS G_CDS: 0.76 Total: -21.44 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.32 Total: -23.80 kcal Atomic # 14 Polarization: 29.07 SS G_CDS: -4.41 Total: 24.66 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.13 -4.98 -34.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234113804.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.653 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds