Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08995 * 109.47147 * 329.99895 * 3 2 1 5 5 C 1.53003 * 109.47320 * 89.99490 * 3 2 1 6 6 C 1.50702 * 109.47016 * 209.99601 * 3 2 1 7 7 N 1.30451 * 126.07244 * 314.69091 * 6 3 2 8 8 O 1.21278 * 110.68163 * 179.79617 * 7 6 3 9 9 C 1.34754 * 109.53616 * 0.46808 * 8 7 6 10 10 C 1.40337 * 126.79653 * 179.69213 * 9 8 7 11 11 H 1.07996 * 119.99926 * 180.02562 * 10 9 8 12 12 C 1.40468 * 120.00089 * 0.02562 * 10 9 8 13 13 N 1.30507 * 119.99868 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00167 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46865 * 89.99947 * 14 12 10 16 16 H 1.48495 * 109.47030 * 210.00139 * 14 12 10 17 17 H 1.48502 * 109.47204 * 330.00127 * 14 12 10 18 18 N 1.33327 * 106.40858 * 359.71006 * 9 8 7 19 19 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 20 20 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 22 22 H 1.09004 * 109.46783 * 60.00316 * 5 3 2 23 23 H 1.09001 * 109.46999 * 179.97438 * 5 3 2 24 24 H 1.08990 * 109.47164 * 300.00165 * 5 3 2 25 25 H 0.96996 * 120.00270 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3387 1.2638 -0.7103 7 7 4.2693 0.3644 -0.5468 8 8 5.2210 0.5980 -1.2613 9 6 4.9867 1.7187 -1.9719 10 6 5.8481 2.3191 -2.9030 11 1 5.5472 3.2224 -3.4127 12 6 7.1016 1.7452 -3.1721 13 7 7.4650 0.6533 -2.5565 14 14 8.2479 2.5439 -4.4120 15 1 9.1225 3.5232 -3.7182 16 1 9.0860 1.5004 -5.0551 17 1 7.4463 3.2432 -5.4482 18 7 3.7747 2.1445 -1.6150 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 2.8829 1.0775 1.9564 23 1 2.6613 2.7670 1.4424 24 1 1.2568 1.8015 1.9562 25 1 8.3304 0.2567 -2.7425 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234742174.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = -2.008657 kcal Electronic energy + Delta-G solvation = -12448.107181 eV Core-core repulsion = 10043.578584 eV Total energy + Delta-G solvation = -2404.528598 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -43.01258 -37.82637 -34.09214 -33.72229 -31.30281 -29.54925 -26.63094 -26.31029 -23.52529 -21.59450 -20.33326 -17.81097 -16.08284 -15.81378 -15.48752 -15.24288 -14.77763 -14.27342 -13.36661 -12.82040 -12.41939 -12.07161 -11.68314 -11.60289 -11.45167 -11.24930 -10.63614 -10.51571 -10.00828 -9.94188 -9.63545 -9.31682 -8.90771 -8.25577 -7.06222 -5.00221 2.80883 2.97343 3.03505 3.27452 3.74184 3.77306 4.21584 5.00689 5.08107 5.39256 5.44720 5.47953 5.54682 5.70290 5.81657 6.00083 6.05890 6.42132 6.56813 6.86747 7.38063 7.53994 7.91055 8.11701 8.33679 8.48427 9.93226 10.41283 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.086151 B = 0.008377 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.932137 B = 3341.789377 C = 3394.701661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.190 3.810 4 H 0.077 0.923 5 C -0.162 4.162 6 C 0.154 3.846 7 N -0.445 5.445 8 O 0.049 5.951 9 C 0.302 3.698 10 C -0.417 4.417 11 H 0.113 0.887 12 C 0.070 3.930 13 N -0.764 5.764 14 Si 0.937 3.063 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.256 1.256 18 N -0.612 5.612 19 H 0.038 0.962 20 H 0.083 0.917 21 H 0.040 0.960 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.932 1.688 1.564 5.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C 0.131 3.869 4 H 0.095 0.905 5 C -0.220 4.220 6 C -0.120 4.120 7 N -0.173 5.173 8 O 0.000 6.000 9 C 0.111 3.889 10 C -0.454 4.454 11 H 0.131 0.869 12 C -0.154 4.154 13 N -0.391 5.391 14 Si 0.760 3.240 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.180 1.180 18 N -0.358 5.358 19 H 0.057 0.943 20 H 0.101 0.899 21 H 0.059 0.941 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.076 0.972 2.114 5.584 hybrid contribution 0.483 0.500 -0.624 0.934 sum -4.593 1.473 1.490 5.048 Atomic orbital electron populations 1.22765 0.81719 1.02380 0.99660 1.88029 1.18844 1.27471 1.94959 1.19770 0.88570 0.84517 0.94067 0.90525 1.22177 1.01872 1.02149 0.95838 1.24543 0.97218 0.92109 0.98102 1.74340 0.98622 1.25435 1.18886 1.85562 1.33332 1.38955 1.42188 1.24214 0.89759 0.83229 0.91699 1.18558 0.97707 1.10388 1.18797 0.86947 1.26199 0.98579 0.94182 0.96481 1.69636 1.20928 1.14975 1.33565 0.85826 0.79072 0.79400 0.79739 1.18880 1.19727 1.17996 1.72180 1.11539 1.30787 1.21274 0.94305 0.89876 0.94144 0.91468 0.91348 0.92332 0.89659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.82 101.05 1.09 1.54 15 2 O -0.38 -7.57 10.33 -35.23 -0.36 -7.93 15 3 C 0.19 3.94 3.27 -27.88 -0.09 3.85 15 4 H 0.08 1.45 7.79 -51.93 -0.40 1.05 15 5 C -0.16 -2.83 9.51 37.16 0.35 -2.47 15 6 C 0.15 4.10 7.06 -156.78 -1.11 2.99 15 7 N -0.45 -12.83 12.15 31.51 0.38 -12.45 15 8 O 0.05 1.47 9.74 15.13 0.15 1.62 15 9 C 0.30 8.82 7.82 -16.35 -0.13 8.69 15 10 C -0.42 -11.16 9.48 -37.95 -0.36 -11.52 15 11 H 0.11 2.82 7.85 -52.49 -0.41 2.41 15 12 C 0.07 1.73 5.50 -17.28 -0.10 1.63 15 13 N -0.76 -19.74 12.06 55.57 0.67 -19.07 15 14 Si 0.94 17.69 29.56 -169.99 -5.03 12.67 15 15 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 16 H -0.27 -4.98 7.11 56.52 0.40 -4.58 15 17 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 18 N -0.61 -17.31 11.61 -11.51 -0.13 -17.44 15 19 H 0.04 0.46 7.87 -51.93 -0.41 0.05 15 20 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.04 0.53 8.09 -51.93 -0.42 0.11 15 22 H 0.07 1.25 8.14 -51.93 -0.42 0.83 15 23 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 24 H 0.06 0.81 7.87 -51.93 -0.41 0.40 15 25 H 0.29 6.66 8.29 -40.82 -0.34 6.32 15 LS Contribution 232.42 15.07 3.50 3.50 Total: -1.00 -31.68 232.42 -3.61 -35.29 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -2.46 Total: -0.88 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: -0.33 Total: 4.70 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.92 Total: -48.96 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.22 Total: -6.31 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.67 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.68 -3.61 -35.29 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234742174.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.277 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds