Wall clock time and date at job start Mon Mar 30 2020 01:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08995 * 109.47147 * 329.99895 * 3 2 1 5 5 C 1.53003 * 109.47320 * 89.99490 * 3 2 1 6 6 C 1.50702 * 109.47016 * 209.99601 * 3 2 1 7 7 N 1.30451 * 126.07244 * 314.69091 * 6 3 2 8 8 O 1.21278 * 110.68163 * 179.79617 * 7 6 3 9 9 C 1.34754 * 109.53616 * 0.46808 * 8 7 6 10 10 C 1.40337 * 126.79653 * 179.69213 * 9 8 7 11 11 H 1.07996 * 119.99926 * 180.02562 * 10 9 8 12 12 C 1.40468 * 120.00089 * 0.02562 * 10 9 8 13 13 N 1.30507 * 119.99868 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00167 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46865 * 89.99947 * 14 12 10 16 16 H 1.48495 * 109.47030 * 210.00139 * 14 12 10 17 17 H 1.48502 * 109.47204 * 330.00127 * 14 12 10 18 18 N 1.33327 * 106.40858 * 359.71006 * 9 8 7 19 19 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 20 20 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 22 22 H 1.09004 * 109.46783 * 60.00316 * 5 3 2 23 23 H 1.09001 * 109.46999 * 179.97438 * 5 3 2 24 24 H 1.08990 * 109.47164 * 300.00165 * 5 3 2 25 25 H 0.96996 * 120.00270 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3387 1.2638 -0.7103 7 7 4.2693 0.3644 -0.5468 8 8 5.2210 0.5980 -1.2613 9 6 4.9867 1.7187 -1.9719 10 6 5.8481 2.3191 -2.9030 11 1 5.5472 3.2224 -3.4127 12 6 7.1016 1.7452 -3.1721 13 7 7.4650 0.6533 -2.5565 14 14 8.2479 2.5439 -4.4120 15 1 9.1225 3.5232 -3.7182 16 1 9.0860 1.5004 -5.0551 17 1 7.4463 3.2432 -5.4482 18 7 3.7747 2.1445 -1.6150 19 1 -0.3634 0.5139 0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8901 22 1 2.8829 1.0775 1.9564 23 1 2.6613 2.7670 1.4424 24 1 1.2568 1.8015 1.9562 25 1 8.3304 0.2567 -2.7425 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234742174.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:15 Heat of formation + Delta-G solvation = -26.961151 kcal Electronic energy + Delta-G solvation = -12449.189203 eV Core-core repulsion = 10043.578584 eV Total energy + Delta-G solvation = -2405.610619 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.09411 -39.29682 -36.08594 -35.69532 -33.09979 -31.36433 -28.55262 -27.65174 -25.19815 -23.67288 -22.20573 -19.71124 -17.93936 -17.58107 -17.42508 -16.90411 -16.16537 -16.05965 -15.07339 -14.24223 -13.82571 -13.62591 -13.47131 -13.29491 -13.07675 -12.63008 -12.28740 -11.97943 -11.90467 -11.90126 -11.45229 -11.04646 -10.75407 -10.32942 -8.95864 -7.11325 0.97692 1.41644 1.51379 1.62450 1.94216 2.15927 2.65814 3.00772 3.26941 3.48977 3.87757 4.09004 4.41164 4.47735 4.54403 4.66252 4.74867 4.81522 4.93258 5.12985 5.43055 5.84038 6.04722 6.13680 6.30746 6.43485 8.06511 8.28886 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.086151 B = 0.008377 C = 0.008246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 324.932137 B = 3341.789377 C = 3394.701661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.188 3.812 4 H 0.094 0.906 5 C -0.152 4.152 6 C 0.160 3.840 7 N -0.478 5.478 8 O 0.013 5.987 9 C 0.268 3.732 10 C -0.432 4.432 11 H 0.125 0.875 12 C 0.027 3.973 13 N -0.796 5.796 14 Si 1.025 2.975 15 H -0.252 1.252 16 H -0.260 1.260 17 H -0.247 1.247 18 N -0.636 5.636 19 H 0.067 0.933 20 H 0.101 0.899 21 H 0.047 0.953 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.102 0.898 25 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 2.623 0.953 5.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.129 3.871 4 H 0.112 0.888 5 C -0.210 4.210 6 C -0.115 4.115 7 N -0.212 5.212 8 O -0.030 6.030 9 C 0.079 3.921 10 C -0.469 4.469 11 H 0.142 0.858 12 C -0.195 4.195 13 N -0.423 5.423 14 Si 0.841 3.159 15 H -0.176 1.176 16 H -0.183 1.183 17 H -0.170 1.170 18 N -0.382 5.382 19 H 0.085 0.915 20 H 0.119 0.881 21 H 0.066 0.934 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.121 0.879 25 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.180 1.896 1.502 5.717 hybrid contribution 0.471 0.175 -0.437 0.666 sum -4.709 2.071 1.066 5.254 Atomic orbital electron populations 1.23096 0.78526 1.04248 1.01413 1.87975 1.22302 1.27087 1.95230 1.20021 0.86219 0.85492 0.95397 0.88842 1.22115 1.03874 1.01221 0.93832 1.25614 0.98732 0.90412 0.96746 1.74271 0.99410 1.27115 1.20369 1.85495 1.34349 1.39794 1.43344 1.24883 0.90819 0.83680 0.92672 1.19170 0.98672 1.10796 1.18272 0.85777 1.27450 0.99430 0.94293 0.98277 1.69699 1.22116 1.16116 1.34409 0.84571 0.76285 0.78542 0.76492 1.17638 1.18345 1.17026 1.72167 1.11670 1.31802 1.22561 0.91453 0.88065 0.93398 0.93318 0.91467 0.87934 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 10.82 113.37 1.23 1.81 15 2 O -0.41 -16.04 10.33 -148.98 -1.54 -17.58 15 3 C 0.19 7.66 3.27 29.85 0.10 7.76 15 4 H 0.09 3.41 7.79 -2.39 -0.02 3.39 15 5 C -0.15 -5.09 9.51 71.98 0.68 -4.41 15 6 C 0.16 8.65 7.06 138.61 0.98 9.63 15 7 N -0.48 -28.54 12.15 -56.63 -0.69 -29.23 15 8 O 0.01 0.84 9.74 64.21 0.63 1.46 15 9 C 0.27 16.12 7.82 85.06 0.66 16.78 15 10 C -0.43 -23.38 9.48 23.32 0.22 -23.15 15 11 H 0.12 6.21 7.85 -2.91 -0.02 6.19 15 12 C 0.03 1.32 5.50 85.43 0.47 1.79 15 13 N -0.80 -41.39 12.06 21.91 0.26 -41.13 15 14 Si 1.03 34.71 29.56 68.60 2.03 36.74 15 15 H -0.25 -8.09 7.11 99.48 0.71 -7.38 15 16 H -0.26 -8.21 7.11 99.48 0.71 -7.51 15 17 H -0.25 -7.98 7.11 99.48 0.71 -7.27 15 18 N -0.64 -36.77 11.61 -305.24 -3.54 -40.32 15 19 H 0.07 1.34 7.87 -2.39 -0.02 1.32 15 20 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 21 H 0.05 1.15 8.09 -2.38 -0.02 1.13 15 22 H 0.05 1.79 8.14 -2.38 -0.02 1.77 15 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 15 24 H 0.10 2.49 7.87 -2.39 -0.02 2.47 15 25 H 0.31 13.84 8.29 -92.71 -0.77 13.08 15 Total: -1.00 -70.93 232.42 2.69 -68.24 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 1.20 Total: 11.58 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 4.34 Total: 10.22 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -3.97 Total: -110.67 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.91 Total: -16.11 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.74 kcal Total: -70.93 2.69 -68.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234742174.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.283 kcal (2) G-P(sol) polarization free energy of solvation -70.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds