Wall clock time and date at job start Mon Mar 30 2020 01:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29942 * 126.28779 * 2 1 4 4 O 1.21306 * 110.24801 * 179.97438 * 3 2 1 5 5 C 1.33635 * 109.81294 * 0.02562 * 4 3 2 6 6 C 1.50694 * 126.55076 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.47412 * 270.02588 * 6 5 4 8 8 H 1.08998 * 109.47285 * 305.00031 * 7 6 5 9 9 O 1.42896 * 109.46914 * 65.00139 * 7 6 5 10 10 C 1.50700 * 109.47208 * 184.99886 * 7 6 5 11 11 H 1.08002 * 119.99770 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00083 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00147 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 120.00278 * 180.02562 * 12 10 7 15 15 H 1.48494 * 109.47228 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46793 * 300.00001 * 14 12 10 17 17 H 1.48500 * 109.47000 * 60.00094 * 14 12 10 18 18 N 1.31128 * 106.89789 * 0.22708 * 5 4 3 19 19 H 1.09005 * 109.46876 * 89.97725 * 1 2 3 20 20 H 1.08995 * 109.47384 * 209.97708 * 1 2 3 21 21 H 1.08994 * 109.47169 * 329.98356 * 1 2 3 22 22 H 1.09004 * 109.47461 * 150.02427 * 6 5 4 23 23 H 1.09005 * 109.47220 * 30.02865 * 6 5 4 24 24 H 0.96699 * 114.00348 * 60.00046 * 9 7 6 25 25 H 0.97005 * 119.99661 * 359.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4419 0.7122 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4371 0.0003 7 6 5.2262 -1.7125 -1.4423 8 1 4.4052 -2.1847 -1.9818 9 8 5.5696 -0.4809 -2.0804 10 6 6.4219 -2.6297 -1.4441 11 1 6.8342 -2.9813 -0.5099 12 6 6.9896 -3.0198 -2.6385 13 7 6.4879 -2.5912 -3.7761 14 14 8.4713 -4.1573 -2.6409 15 1 8.8880 -4.4245 -4.0409 16 1 9.5898 -3.5147 -1.9050 17 1 8.1137 -5.4374 -1.9786 18 7 2.3030 -1.0841 -0.0053 19 1 -0.3633 0.0004 -1.0277 20 1 -0.3634 -0.8901 0.5134 21 1 -0.3633 0.8898 0.5141 22 1 4.6205 -2.3823 0.5136 23 1 5.5841 -0.8858 0.5147 24 1 6.2948 -0.0051 -1.6528 25 1 5.7182 -2.0008 -3.7748 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235803108.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:28 Heat of formation + Delta-G solvation = -25.923630 kcal Electronic energy + Delta-G solvation = -12427.003363 eV Core-core repulsion = 10021.437735 eV Total energy + Delta-G solvation = -2405.565629 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.58273 -38.54368 -37.07537 -34.66202 -34.28340 -31.39021 -30.02126 -27.26769 -24.78185 -23.72346 -22.23114 -19.57593 -19.09401 -18.41680 -17.14382 -16.11846 -15.72591 -15.56578 -15.01355 -14.71267 -14.49138 -14.11097 -13.56527 -13.41170 -12.77941 -12.57916 -12.48361 -12.22422 -12.09492 -11.90051 -11.56727 -10.89705 -10.62672 -10.16474 -8.61696 -6.48303 0.08538 1.17107 1.59872 1.67042 1.81990 1.85649 2.59573 2.71592 3.06325 3.18066 3.82739 4.07601 4.19458 4.23509 4.48829 4.53125 4.66979 4.83669 4.90556 5.05518 5.31804 5.76883 6.13460 6.52984 7.10090 7.13605 7.49063 8.76277 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.078876 B = 0.008112 C = 0.008062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 354.903064 B = 3450.732684 C = 3472.109801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.160 3.840 3 N -0.415 5.415 4 O 0.062 5.938 5 C 0.210 3.790 6 C -0.040 4.040 7 C 0.220 3.780 8 H 0.018 0.982 9 O -0.595 6.595 10 C -0.654 4.654 11 H 0.071 0.929 12 C -0.017 4.017 13 N -0.923 5.923 14 Si 1.119 2.881 15 H -0.292 1.292 16 H -0.264 1.264 17 H -0.268 1.268 18 N -0.519 5.519 19 H 0.098 0.902 20 H 0.105 0.895 21 H 0.105 0.895 22 H 0.120 0.880 23 H 0.122 0.878 24 H 0.372 0.628 25 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 2.770 9.041 10.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.113 4.113 3 N -0.129 5.129 4 O 0.010 5.990 5 C -0.010 4.010 6 C -0.079 4.079 7 C 0.162 3.838 8 H 0.036 0.964 9 O -0.402 6.402 10 C -0.691 4.691 11 H 0.089 0.911 12 C -0.219 4.219 13 N -0.558 5.558 14 Si 0.940 3.060 15 H -0.218 1.218 16 H -0.189 1.189 17 H -0.193 1.193 18 N -0.254 5.254 19 H 0.117 0.883 20 H 0.123 0.877 21 H 0.123 0.877 22 H 0.138 0.862 23 H 0.140 0.860 24 H 0.220 0.780 25 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.648 2.342 7.673 9.811 hybrid contribution -0.661 0.966 1.032 1.560 sum -6.308 3.308 8.705 11.248 Atomic orbital electron populations 1.20356 0.79814 1.06048 1.05400 1.26799 1.02414 0.83069 0.99029 1.74530 0.89682 1.24872 1.23861 1.85230 1.22434 1.25183 1.66191 1.29300 0.97549 0.81869 0.92239 1.21146 0.87223 0.98142 1.01370 1.19389 0.94709 0.83023 0.86722 0.96403 1.86470 1.56825 1.37317 1.59599 1.22737 1.16696 1.33578 0.96139 0.91130 1.27357 1.04089 0.98674 0.91793 1.70793 1.23807 1.32229 1.28996 0.82931 0.72451 0.74698 0.75954 1.21820 1.18864 1.19347 1.71931 1.00368 1.30284 1.22827 0.88312 0.87668 0.87687 0.86158 0.86017 0.78035 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.26 10.51 71.24 0.75 -0.51 15 2 C 0.16 5.39 8.22 138.47 1.14 6.53 15 3 N -0.42 -15.29 12.16 -60.32 -0.73 -16.03 15 4 O 0.06 2.37 11.31 74.90 0.85 3.22 15 5 C 0.21 8.03 7.54 88.38 0.67 8.70 15 6 C -0.04 -1.47 5.46 29.85 0.16 -1.31 15 7 C 0.22 10.58 2.42 29.85 0.07 10.66 15 8 H 0.02 1.00 8.01 -2.39 -0.02 0.99 15 9 O -0.60 -29.10 11.77 -148.98 -1.75 -30.85 15 10 C -0.65 -33.66 8.76 25.60 0.22 -33.44 15 11 H 0.07 3.37 7.74 -2.91 -0.02 3.35 15 12 C -0.02 -0.93 5.40 84.65 0.46 -0.48 15 13 N -0.92 -56.00 13.53 21.45 0.29 -55.71 15 14 Si 1.12 47.16 29.90 68.60 2.05 49.21 15 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 15 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 17 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 18 N -0.52 -19.91 11.55 -303.22 -3.50 -23.41 15 19 H 0.10 1.91 8.14 -2.38 -0.02 1.89 15 20 H 0.10 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 22 H 0.12 4.17 8.14 -2.38 -0.02 4.15 15 23 H 0.12 3.80 8.14 -2.38 -0.02 3.78 15 24 H 0.37 15.49 9.04 -74.06 -0.67 14.82 15 25 H 0.27 16.77 6.47 -92.70 -0.60 16.17 15 Total: -1.00 -67.15 231.81 1.38 -65.77 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.71 Total: 17.65 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 3.47 Total: -9.84 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -3.95 Total: -95.15 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.91 Total: -27.63 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.05 Total: 49.21 kcal Total: -67.15 1.38 -65.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235803108.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.845 kcal (2) G-P(sol) polarization free energy of solvation -67.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds