Wall clock time and date at job start Mon Mar 30 2020 01:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29946 * 126.28426 * 2 1 4 4 O 1.21309 * 110.24521 * 179.68915 * 3 2 1 5 5 C 1.33639 * 109.80928 * 0.46841 * 4 3 2 6 6 C 1.50706 * 126.55037 * 179.79972 * 5 4 3 7 7 C 1.52997 * 109.47238 * 269.69219 * 6 5 4 8 8 H 1.08998 * 109.47192 * 54.99616 * 7 6 5 9 9 O 1.42896 * 109.46944 * 294.99550 * 7 6 5 10 10 C 1.50695 * 109.46942 * 174.99721 * 7 6 5 11 11 H 1.07997 * 120.00519 * 0.02562 * 10 7 6 12 12 C 1.37888 * 119.99951 * 179.97438 * 10 7 6 13 13 N 1.31512 * 119.99548 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 119.99928 * 180.02562 * 12 10 7 15 15 H 1.48493 * 109.47285 * 60.00103 * 14 12 10 16 16 H 1.48503 * 109.46885 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47231 * 299.99869 * 14 12 10 18 18 N 1.31128 * 106.90120 * 359.54177 * 5 4 3 19 19 H 1.09000 * 109.47111 * 270.02312 * 1 2 3 20 20 H 1.08996 * 109.47178 * 30.02037 * 1 2 3 21 21 H 1.08999 * 109.47523 * 150.02146 * 1 2 3 22 22 H 1.09001 * 109.46953 * 29.68831 * 6 5 4 23 23 H 1.09000 * 109.47318 * 149.68429 * 6 5 4 24 24 H 0.96694 * 114.00569 * 299.99930 * 9 7 6 25 25 H 0.97002 * 119.99896 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7123 0.0062 5 6 3.5298 -0.6212 0.0006 6 6 4.7969 -1.4371 0.0009 7 6 5.2261 -1.7133 -1.4414 8 1 5.3165 -0.7704 -1.9805 9 8 4.2474 -2.5354 -2.0803 10 6 6.5559 -2.4223 -1.4427 11 1 7.0458 -2.6531 -0.5084 12 6 7.1467 -2.7772 -2.6370 13 7 6.5499 -2.4965 -3.7748 14 14 8.7947 -3.6566 -2.6386 15 1 8.6711 -4.9410 -1.9039 16 1 9.2113 -3.9246 -4.0386 17 1 9.8122 -2.8025 -1.9748 18 7 2.3030 -1.0841 0.0003 19 1 -0.3633 0.0004 1.0277 20 1 -0.3633 0.8898 -0.5141 21 1 -0.3634 -0.8901 -0.5135 22 1 5.5841 -0.8854 0.5149 23 1 4.6205 -2.3819 0.5149 24 1 4.1142 -3.3926 -1.6532 25 1 6.9654 -2.7465 -4.6149 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235803143.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:30 Heat of formation + Delta-G solvation = -18.517251 kcal Electronic energy + Delta-G solvation = -12386.238529 eV Core-core repulsion = 9980.994065 eV Total energy + Delta-G solvation = -2405.244464 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.48703 -38.18077 -36.93084 -34.50710 -34.19998 -31.34793 -29.93753 -27.68905 -24.67382 -23.58943 -21.95926 -19.28411 -19.00550 -18.17473 -16.64963 -16.42845 -16.04129 -15.41336 -14.82125 -14.64480 -14.41722 -13.72637 -13.38598 -13.24165 -12.84347 -12.73382 -12.51558 -12.32272 -12.02661 -11.96596 -11.33234 -10.84211 -10.68859 -10.16387 -8.12767 -6.39401 0.18095 1.29652 1.47855 1.49075 1.56950 1.91273 2.43268 2.82729 3.15079 3.15757 4.02258 4.21692 4.38415 4.46092 4.59733 4.60454 4.72419 4.98418 5.00854 5.14911 5.56636 5.70176 6.00393 6.72039 7.19559 7.34531 7.52944 8.92354 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.082624 B = 0.008155 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 338.804272 B = 3432.612404 C = 3535.060223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.160 3.840 3 N -0.419 5.419 4 O 0.050 5.950 5 C 0.210 3.790 6 C -0.047 4.047 7 C 0.235 3.765 8 H 0.022 0.978 9 O -0.579 6.579 10 C -0.582 4.582 11 H 0.078 0.922 12 C 0.025 3.975 13 N -0.903 5.903 14 Si 0.965 3.035 15 H -0.264 1.264 16 H -0.292 1.292 17 H -0.265 1.265 18 N -0.504 5.504 19 H 0.109 0.891 20 H 0.097 0.903 21 H 0.098 0.902 22 H 0.121 0.879 23 H 0.121 0.879 24 H 0.361 0.639 25 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.106 1.594 8.349 10.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.113 4.113 3 N -0.135 5.135 4 O -0.002 6.002 5 C -0.010 4.010 6 C -0.086 4.086 7 C 0.177 3.823 8 H 0.040 0.960 9 O -0.383 6.383 10 C -0.620 4.620 11 H 0.096 0.904 12 C -0.178 4.178 13 N -0.540 5.540 14 Si 0.790 3.210 15 H -0.189 1.189 16 H -0.218 1.218 17 H -0.190 1.190 18 N -0.239 5.239 19 H 0.128 0.872 20 H 0.116 0.884 21 H 0.117 0.883 22 H 0.139 0.861 23 H 0.139 0.861 24 H 0.206 0.794 25 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.754 2.624 7.765 10.620 hybrid contribution 1.083 -0.746 -0.108 1.319 sum -5.671 1.878 7.657 9.712 Atomic orbital electron populations 1.20332 0.79995 1.05529 1.05691 1.26800 1.02370 0.83256 0.98875 1.74526 0.89633 1.24972 1.24336 1.85221 1.22624 1.25558 1.66791 1.29380 0.97819 0.81583 0.92193 1.21306 0.87001 0.98171 1.02115 1.19215 0.86792 0.90798 0.85535 0.96028 1.86540 1.61661 1.31054 1.59050 1.21948 1.05646 1.40758 0.93628 0.90352 1.25945 1.00955 0.95752 0.95121 1.70230 1.39761 1.45972 0.98068 0.85525 0.79304 0.79338 0.76880 1.18871 1.21757 1.19005 1.71924 1.00115 1.29757 1.22061 0.87225 0.88419 0.88320 0.86106 0.86140 0.79357 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.26 10.51 71.24 0.75 -0.51 15 2 C 0.16 5.44 8.22 138.47 1.14 6.58 15 3 N -0.42 -15.63 12.16 -60.32 -0.73 -16.37 15 4 O 0.05 1.93 11.31 74.86 0.85 2.77 15 5 C 0.21 8.05 7.54 88.38 0.67 8.72 15 6 C -0.05 -1.72 5.46 29.85 0.16 -1.55 15 7 C 0.24 11.37 2.81 29.85 0.08 11.45 15 8 H 0.02 1.21 8.14 -2.39 -0.02 1.19 15 9 O -0.58 -29.41 12.48 -148.98 -1.86 -31.27 15 10 C -0.58 -29.48 8.76 25.60 0.22 -29.26 15 11 H 0.08 3.63 7.74 -2.91 -0.02 3.61 15 12 C 0.02 1.32 5.40 84.66 0.46 1.78 15 13 N -0.90 -52.92 12.84 21.45 0.28 -52.64 15 14 Si 0.97 41.26 29.54 68.60 2.03 43.29 15 15 H -0.26 -10.75 7.11 99.48 0.71 -10.04 15 16 H -0.29 -12.62 7.11 99.48 0.71 -11.91 15 17 H -0.27 -10.85 7.11 99.48 0.71 -10.14 15 18 N -0.50 -19.16 11.55 -303.20 -3.50 -22.67 15 19 H 0.11 1.85 8.14 -2.39 -0.02 1.83 15 20 H 0.10 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 22 H 0.12 3.85 8.14 -2.39 -0.02 3.84 15 23 H 0.12 3.94 8.14 -2.39 -0.02 3.92 15 24 H 0.36 16.03 9.04 -74.06 -0.67 15.36 15 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 15 Total: -1.00 -65.48 233.84 1.08 -64.41 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.54 Total: 15.27 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 3.48 Total: -2.80 kcal Atomic # 7 Polarization: -87.72 SS G_CDS: -3.96 Total: -91.68 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -1.01 Total: -28.50 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -65.48 1.08 -64.41 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235803143.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.892 kcal (2) G-P(sol) polarization free energy of solvation -65.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds