Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47235 * 299.99503 * 3 2 1 6 6 H 1.48505 * 109.47314 * 59.99993 * 3 2 1 7 7 C 1.37883 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99760 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47233 * 179.97438 * 9 7 2 11 11 N 1.31132 * 126.54774 * 90.24914 * 10 9 7 12 12 C 1.34505 * 105.61193 * 180.12467 * 11 10 9 13 13 C 1.50699 * 126.28755 * 179.90547 * 12 11 10 14 14 C 1.53006 * 109.46866 * 269.71375 * 13 12 11 15 15 O 1.42906 * 109.46748 * 179.97438 * 14 13 12 16 16 N 1.29945 * 107.42244 * 359.64472 * 12 11 10 17 17 O 1.21301 * 110.25300 * 0.22272 * 16 12 11 18 18 H 0.96995 * 119.99646 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47380 * 59.99972 * 9 7 2 20 20 H 1.09001 * 109.47313 * 300.00187 * 9 7 2 21 21 H 1.08993 * 109.47512 * 149.71497 * 13 12 11 22 22 H 1.09000 * 109.47247 * 29.71206 * 13 12 11 23 23 H 1.09000 * 109.47050 * 299.99952 * 14 13 12 24 24 H 1.09001 * 109.46801 * 60.00064 * 14 13 12 25 25 H 0.96698 * 113.99401 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0005 11 7 2.7342 -4.2412 1.0540 12 6 3.5542 -5.1929 0.5734 13 6 4.3773 -6.1562 1.3892 14 6 5.7526 -5.5452 1.6652 15 8 6.5329 -6.4586 2.4393 16 7 3.5021 -5.1327 -0.7236 17 8 2.7471 -4.2499 -1.0730 18 1 -0.4849 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 4.4979 -7.0886 0.8378 22 1 3.8721 -6.3558 2.3343 23 1 6.2578 -5.3456 0.7201 24 1 5.6319 -4.6129 2.2167 25 1 7.4195 -6.1363 2.6518 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236512178.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = 0.423359 kcal Electronic energy + Delta-G solvation = -12058.066731 eV Core-core repulsion = 9653.643593 eV Total energy + Delta-G solvation = -2404.423137 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.82072 -37.24259 -35.32185 -34.00183 -32.35855 -30.37139 -28.41313 -24.17341 -24.02100 -22.27526 -20.34857 -17.70010 -17.45242 -16.54974 -16.29100 -15.33251 -14.77109 -14.19581 -13.67269 -13.29016 -12.53449 -12.19369 -12.08964 -11.71624 -11.35470 -11.07809 -10.83017 -10.69976 -10.36031 -10.14195 -10.05534 -9.86500 -8.98347 -8.64951 -6.28117 -4.33938 1.89202 2.87568 3.20891 3.28785 3.33545 3.71429 3.91095 4.29107 4.60696 4.68706 5.08649 5.13515 5.16448 5.37854 5.77688 5.87500 6.08612 6.54857 6.64568 7.08969 7.15867 7.46745 7.65321 7.88580 8.66466 8.89594 9.31107 10.82384 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.047056 B = 0.008022 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.897832 B = 3489.365173 C = 3836.025442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.100 3.900 10 C 0.240 3.760 11 N -0.506 5.506 12 C 0.157 3.843 13 C -0.021 4.021 14 C 0.083 3.917 15 O -0.574 6.574 16 N -0.406 5.406 17 O 0.062 5.938 18 H 0.268 0.732 19 H 0.059 0.941 20 H 0.070 0.930 21 H 0.092 0.908 22 H 0.099 0.901 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.541 -6.959 1.831 10.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.061 3.939 10 C 0.022 3.978 11 N -0.240 5.240 12 C -0.116 4.116 13 C -0.060 4.060 14 C 0.004 3.996 15 O -0.379 6.379 16 N -0.119 5.119 17 O 0.007 5.993 18 H 0.077 0.923 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.110 0.890 22 H 0.117 0.883 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 7.326 -7.810 1.689 10.841 hybrid contribution 0.802 1.414 -0.016 1.626 sum 8.128 -6.396 1.673 10.477 Atomic orbital electron populations 1.69932 1.06038 1.27553 1.48939 1.24933 0.95002 0.99473 0.94320 0.86286 0.79948 0.82505 0.77865 1.19614 1.20594 1.20613 1.20824 0.93259 0.88832 1.53381 0.92024 1.18234 0.89863 0.84507 1.01295 1.30187 0.94300 0.94496 0.78846 1.71974 1.13306 1.09352 1.29376 1.25411 0.99278 0.98187 0.88713 1.19556 0.92268 0.94896 0.99238 1.22031 0.90851 0.91949 0.94738 1.86398 1.30373 1.46264 1.74897 1.74512 1.12791 1.09124 1.15492 1.85258 1.43069 1.34332 1.36657 0.92276 0.92301 0.91237 0.88986 0.88292 0.93276 0.92610 0.77065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.46 13.29 55.43 0.74 -23.72 15 2 C 0.07 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.91 20.55 29.54 -169.99 -5.02 15.53 15 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.52 -13.97 9.09 -34.44 -0.31 -14.28 15 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 9 C 0.10 2.43 5.60 -29.04 -0.16 2.27 15 10 C 0.24 5.41 7.70 -13.06 -0.10 5.31 15 11 N -0.51 -11.08 11.55 -9.87 -0.11 -11.20 15 12 C 0.16 3.04 7.47 -156.36 -1.17 1.87 15 13 C -0.02 -0.31 6.21 -27.88 -0.17 -0.48 15 14 C 0.08 1.11 7.03 37.16 0.26 1.37 15 15 O -0.57 -6.77 13.66 -35.23 -0.48 -7.25 15 16 N -0.41 -8.31 12.16 30.90 0.38 -7.93 15 17 O 0.06 1.34 11.31 18.11 0.20 1.55 15 18 H 0.27 6.92 8.31 -40.82 -0.34 6.59 15 19 H 0.06 1.42 8.14 -51.93 -0.42 1.00 15 20 H 0.07 1.75 8.14 -51.93 -0.42 1.33 15 21 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 22 H 0.10 1.42 8.14 -51.93 -0.42 0.99 15 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.38 2.63 9.12 45.56 0.42 3.05 15 LS Contribution 235.41 15.07 3.55 3.55 Total: -1.00 -29.42 235.41 -4.17 -33.59 By element: Atomic # 1 Polarization: -0.17 SS G_CDS: -1.66 Total: -1.83 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.75 Total: -2.28 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 1.00 Total: -42.85 kcal Atomic # 8 Polarization: -5.43 SS G_CDS: -0.28 Total: -5.70 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.42 -4.17 -33.59 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236512178.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.010 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds