Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86791 * 120.00008 * 2 1 4 4 H 1.48499 * 109.47164 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47235 * 299.99503 * 3 2 1 6 6 H 1.48505 * 109.47314 * 59.99993 * 3 2 1 7 7 C 1.37883 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99760 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47233 * 179.97438 * 9 7 2 11 11 N 1.31132 * 126.54774 * 90.24914 * 10 9 7 12 12 C 1.34505 * 105.61193 * 180.12467 * 11 10 9 13 13 C 1.50699 * 126.28755 * 179.90547 * 12 11 10 14 14 C 1.53006 * 109.46866 * 269.71375 * 13 12 11 15 15 O 1.42906 * 109.46748 * 179.97438 * 14 13 12 16 16 N 1.29945 * 107.42244 * 359.64472 * 12 11 10 17 17 O 1.21301 * 110.25300 * 0.22272 * 16 12 11 18 18 H 0.96995 * 119.99646 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47380 * 59.99972 * 9 7 2 20 20 H 1.09001 * 109.47313 * 300.00187 * 9 7 2 21 21 H 1.08993 * 109.47512 * 149.71497 * 13 12 11 22 22 H 1.09000 * 109.47247 * 29.71206 * 13 12 11 23 23 H 1.09000 * 109.47050 * 299.99952 * 14 13 12 24 24 H 1.09001 * 109.46801 * 60.00064 * 14 13 12 25 25 H 0.96698 * 113.99401 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6447 0.0005 11 7 2.7342 -4.2412 1.0540 12 6 3.5542 -5.1929 0.5734 13 6 4.3773 -6.1562 1.3892 14 6 5.7526 -5.5452 1.6652 15 8 6.5329 -6.4586 2.4393 16 7 3.5021 -5.1327 -0.7236 17 8 2.7471 -4.2499 -1.0730 18 1 -0.4849 0.8400 -0.0004 19 1 0.6247 -2.5571 -0.8896 20 1 0.6240 -2.5567 0.8903 21 1 4.4979 -7.0886 0.8378 22 1 3.8721 -6.3558 2.3343 23 1 6.2578 -5.3456 0.7201 24 1 5.6319 -4.6129 2.2167 25 1 7.4195 -6.1363 2.6518 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236512178.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = -22.666340 kcal Electronic energy + Delta-G solvation = -12059.067975 eV Core-core repulsion = 9653.643593 eV Total energy + Delta-G solvation = -2405.424382 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -46.48063 -38.29156 -36.88180 -35.85528 -34.11314 -31.78086 -30.27038 -26.03674 -25.44090 -23.86077 -21.91793 -19.29013 -18.78199 -18.26388 -18.01304 -16.83049 -16.25731 -15.31262 -15.24325 -14.89089 -14.47199 -13.95902 -13.45208 -13.00262 -12.99228 -12.86408 -12.61676 -12.22934 -12.17376 -11.93878 -11.71052 -11.04089 -10.74010 -10.67843 -8.31331 -6.44739 0.19485 1.23776 1.43532 1.45546 1.57197 1.97911 2.39499 2.57321 3.01613 3.12860 3.54037 3.95015 4.02734 4.21026 4.42514 4.72543 4.74399 4.91969 4.97479 5.10066 5.22347 5.58668 5.87189 6.59998 6.78240 7.20272 7.24282 8.79816 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.047056 B = 0.008022 C = 0.007297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.897832 B = 3489.365173 C = 3836.025442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.022 3.978 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.108 3.892 10 C 0.233 3.767 11 N -0.519 5.519 12 C 0.169 3.831 13 C -0.022 4.022 14 C 0.092 3.908 15 O -0.579 6.579 16 N -0.411 5.411 17 O 0.053 5.947 18 H 0.273 0.727 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.109 0.891 22 H 0.107 0.893 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.812 -7.009 2.196 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.796 3.204 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.582 4.582 8 H 0.072 0.928 9 C 0.069 3.931 10 C 0.014 3.986 11 N -0.254 5.254 12 C -0.104 4.104 13 C -0.061 4.061 14 C 0.013 3.987 15 O -0.388 6.388 16 N -0.126 5.126 17 O 0.001 5.999 18 H 0.082 0.918 19 H 0.073 0.927 20 H 0.075 0.925 21 H 0.127 0.873 22 H 0.126 0.874 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.608 -7.859 2.043 11.834 hybrid contribution 0.443 1.335 -0.093 1.410 sum 9.050 -6.524 1.950 11.326 Atomic orbital electron populations 1.70012 1.07336 1.28739 1.49319 1.25745 0.95823 1.02722 0.93642 0.85290 0.78568 0.78303 0.78242 1.19449 1.19690 1.19923 1.21046 0.93106 0.90144 1.53917 0.92762 1.17946 0.89987 0.84763 1.00408 1.29770 0.94637 0.94619 0.79539 1.71978 1.13905 1.10080 1.29411 1.26100 0.98267 0.97501 0.88566 1.19787 0.92706 0.94466 0.99157 1.21802 0.90214 0.91634 0.95034 1.86346 1.31913 1.46043 1.74534 1.74508 1.12934 1.09034 1.16132 1.85250 1.43452 1.34723 1.36492 0.91797 0.92741 0.92538 0.87296 0.87420 0.93027 0.93304 0.74466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.52 13.29 21.45 0.28 -50.23 15 2 C 0.02 1.14 5.46 84.66 0.46 1.60 15 3 Si 0.97 41.62 29.54 68.60 2.03 43.65 15 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 15 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.54 -29.15 9.09 25.60 0.23 -28.91 15 8 H 0.05 2.93 7.74 -2.91 -0.02 2.90 15 9 C 0.11 5.34 5.60 29.10 0.16 5.51 15 10 C 0.23 10.56 7.70 88.38 0.68 11.24 15 11 N -0.52 -22.46 11.55 -303.18 -3.50 -25.97 15 12 C 0.17 6.31 7.47 138.46 1.03 7.34 15 13 C -0.02 -0.62 6.21 29.85 0.19 -0.44 15 14 C 0.09 2.26 7.03 71.98 0.51 2.76 15 15 O -0.58 -12.00 13.66 -148.98 -2.04 -14.03 15 16 N -0.41 -16.42 12.16 -60.31 -0.73 -17.15 15 17 O 0.05 2.27 11.31 74.86 0.85 3.12 15 18 H 0.27 14.03 8.31 -92.71 -0.77 13.26 15 19 H 0.05 2.70 8.14 -2.39 -0.02 2.69 15 20 H 0.06 2.92 8.14 -2.39 -0.02 2.90 15 21 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.11 2.83 8.14 -2.39 -0.02 2.81 15 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 15 25 H 0.40 4.36 9.12 -74.06 -0.68 3.68 15 Total: -1.00 -60.71 235.41 0.69 -60.03 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 0.54 Total: 1.48 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 3.26 Total: -0.89 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -3.95 Total: -93.35 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -1.19 Total: -10.91 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -60.71 0.69 -60.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236512178.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.359 kcal (2) G-P(sol) polarization free energy of solvation -60.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds