Wall clock time and date at job start Mon Mar 30 2020 02:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 112.91104 * 2 1 4 4 C 1.53782 * 113.61248 * 131.25143 * 2 1 3 5 5 H 1.09001 * 113.61431 * 254.61390 * 4 2 1 6 6 C 1.50702 * 113.61352 * 25.42865 * 4 2 1 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 4 2 8 8 C 1.37884 * 119.99942 * 179.72222 * 6 4 2 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 4 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 4 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.53777 * 87.08557 * 139.97904 * 4 2 1 15 15 C 1.53781 * 113.61409 * 228.74282 * 2 1 3 16 16 H 1.08999 * 113.61743 * 334.57251 * 15 2 1 17 17 C 1.50705 * 113.61457 * 105.47217 * 15 2 1 18 18 O 1.20831 * 119.99414 * 0.02562 * 17 15 2 19 19 O 1.34221 * 120.00170 * 179.97438 * 17 15 2 20 20 H 1.08993 * 109.47243 * 288.75237 * 1 2 3 21 21 H 1.09002 * 109.46786 * 48.75156 * 1 2 3 22 22 H 1.08997 * 109.47361 * 168.74568 * 1 2 3 23 23 H 1.09004 * 109.47308 * 191.24664 * 3 2 1 24 24 H 1.09001 * 109.47351 * 311.24709 * 3 2 1 25 25 H 1.09004 * 109.47389 * 71.25200 * 3 2 1 26 26 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 27 27 H 1.09001 * 113.61458 * 89.11079 * 14 4 2 28 28 H 1.08999 * 113.62094 * 220.02427 * 14 4 2 29 29 H 0.96702 * 117.00155 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4092 0.0000 4 6 2.1460 -0.9291 1.0594 5 1 2.5637 -0.3989 1.9153 6 6 1.2451 -2.0689 1.4598 7 1 0.2692 -2.1702 1.0085 8 6 1.6694 -2.9861 2.3979 9 7 2.8579 -2.8631 2.9472 10 14 0.5558 -4.4033 2.8885 11 1 0.2491 -5.2289 1.6928 12 1 1.2397 -5.2407 3.9065 13 1 -0.7070 -3.8669 3.4568 14 6 3.1923 -1.3137 0.0001 15 6 2.1460 -0.9292 -1.0593 16 1 1.4945 -1.7536 -1.3489 17 6 2.7254 -0.1962 -2.2417 18 8 2.6764 1.0102 -2.2878 19 8 3.2966 -0.8834 -3.2432 20 1 -0.3633 0.3303 0.9730 21 1 -0.3633 0.6776 -0.7727 22 1 -0.3634 -1.0079 -0.2006 23 1 3.1955 1.3515 -0.2004 24 1 1.6430 2.0077 -0.7727 25 1 1.9628 1.8725 0.9732 26 1 3.1562 -3.5081 3.6074 27 1 4.0711 -0.6688 0.0001 28 1 3.4443 -2.3742 0.0001 29 1 3.6546 -0.3696 -3.9801 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238204034.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:44 Heat of formation + Delta-G solvation = -99.409478 kcal Electronic energy + Delta-G solvation = -13176.633933 eV Core-core repulsion = 10871.422062 eV Total energy + Delta-G solvation = -2305.211871 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.88253 -39.55117 -36.93075 -34.41198 -31.43288 -29.17140 -28.21197 -25.97167 -23.16659 -22.52078 -19.50305 -18.93615 -17.92235 -17.14865 -16.59430 -16.39225 -15.28599 -15.00666 -14.67054 -14.07117 -13.90105 -13.57435 -13.06505 -12.81444 -12.63922 -12.50535 -12.38553 -12.21219 -12.01007 -11.77526 -11.42503 -10.90546 -10.64902 -10.42342 -10.30906 -8.09320 -6.17877 1.29266 1.47793 1.48313 1.55429 2.30704 2.47417 3.22140 3.61334 3.93071 4.13230 4.38508 4.56243 4.66253 4.74359 4.95351 5.01153 5.09725 5.15930 5.29808 5.32860 5.40293 5.57729 5.60771 5.74954 5.84199 5.93025 6.43972 6.93549 7.14555 7.50613 9.01440 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.047201 B = 0.011192 C = 0.010603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.066415 B = 2501.189956 C = 2640.120511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.071 4.071 3 C -0.101 4.101 4 C 0.044 3.956 5 H 0.008 0.992 6 C -0.512 4.512 7 H 0.074 0.926 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.953 3.047 11 H -0.268 1.268 12 H -0.291 1.291 13 H -0.270 1.270 14 C -0.111 4.111 15 C -0.088 4.088 16 H 0.120 0.880 17 C 0.493 3.507 18 O -0.534 6.534 19 O -0.515 6.515 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.038 0.962 24 H 0.066 0.934 25 H 0.043 0.957 26 H 0.260 0.740 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.814 3.001 -8.663 9.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.071 4.071 3 C -0.158 4.158 4 C 0.026 3.974 5 H 0.026 0.974 6 C -0.550 4.550 7 H 0.092 0.908 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.779 3.221 11 H -0.193 1.193 12 H -0.217 1.217 13 H -0.195 1.195 14 C -0.149 4.149 15 C -0.107 4.107 16 H 0.138 0.862 17 C 0.338 3.662 18 O -0.425 6.425 19 O -0.328 6.328 20 H 0.071 0.929 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.057 0.943 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -1.866 3.016 -8.230 8.962 hybrid contribution 0.175 -0.513 0.050 0.544 sum -1.691 2.503 -8.180 8.720 Atomic orbital electron populations 1.21560 0.93468 1.01369 1.00961 1.21967 0.96206 0.94184 0.94761 1.21519 0.99618 0.94542 1.00078 1.19837 0.92935 0.93524 0.91152 0.97378 1.21306 1.02061 1.09250 1.22348 0.90819 1.25799 0.96239 1.00496 0.96135 1.70105 1.20086 1.37301 1.28915 0.85689 0.79039 0.79362 0.78042 1.19292 1.21684 1.19501 1.22815 0.95891 0.99789 0.96394 1.22549 1.00079 0.99807 0.88240 0.86169 1.23713 0.73657 0.86121 0.82735 1.90657 1.56452 1.16495 1.78853 1.84577 1.70125 1.45725 1.32388 0.92926 0.92750 0.92337 0.94261 0.91544 0.93838 0.93156 0.92656 0.93029 0.71746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.22 8.27 71.98 0.60 -3.63 15 2 C -0.07 -2.85 1.23 -51.66 -0.06 -2.91 15 3 C -0.10 -3.79 7.32 71.98 0.53 -3.27 15 4 C 0.04 2.15 3.13 -11.01 -0.03 2.11 15 5 H 0.01 0.44 8.09 -2.39 -0.02 0.42 15 6 C -0.51 -26.46 7.94 25.60 0.20 -26.25 15 7 H 0.07 3.61 5.72 -2.91 -0.02 3.59 15 8 C 0.01 0.65 5.46 84.66 0.46 1.11 15 9 N -0.92 -53.24 13.28 21.45 0.28 -52.95 15 10 Si 0.95 42.19 29.54 68.60 2.03 44.21 15 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 15 12 H -0.29 -12.93 7.11 99.48 0.71 -12.22 15 13 H -0.27 -11.58 7.11 99.48 0.71 -10.87 15 14 C -0.11 -4.93 6.86 31.12 0.21 -4.72 15 15 C -0.09 -3.37 3.48 -11.01 -0.04 -3.40 15 16 H 0.12 4.51 7.96 -2.39 -0.02 4.49 15 17 C 0.49 16.76 7.58 71.24 0.54 17.30 15 18 O -0.53 -19.51 13.44 21.95 0.30 -19.22 15 19 O -0.51 -13.95 13.42 -51.33 -0.69 -14.63 15 20 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 22 H 0.06 2.12 6.30 -2.39 -0.02 2.11 15 23 H 0.04 1.52 6.35 -2.38 -0.02 1.50 15 24 H 0.07 2.39 6.93 -2.39 -0.02 2.37 15 25 H 0.04 1.58 8.14 -2.38 -0.02 1.57 15 26 H 0.26 14.32 8.31 -92.70 -0.77 13.55 15 27 H 0.05 2.39 7.60 -2.39 -0.02 2.37 15 28 H 0.05 2.48 8.09 -2.39 -0.02 2.46 15 29 H 0.42 6.87 9.10 -74.06 -0.67 6.19 15 Total: -1.00 -60.61 241.15 4.80 -55.81 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: 0.48 Total: 10.44 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: 2.40 Total: -23.66 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: 0.28 Total: -52.95 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.39 Total: -33.85 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -60.61 4.80 -55.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238204034.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.596 kcal (2) G-P(sol) polarization free energy of solvation -60.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds