Wall clock time and date at job start Mon Mar 30 2020 02:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 112.90912 * 2 1 4 4 C 1.53782 * 113.61183 * 131.24765 * 2 1 3 5 5 H 1.08997 * 113.61995 * 25.34674 * 4 2 1 6 6 C 1.50702 * 113.61352 * 254.52791 * 4 2 1 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 4 2 8 8 C 1.37884 * 119.99942 * 179.72222 * 6 4 2 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 4 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 4 11 11 H 1.48496 * 109.47341 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46983 * 120.00379 * 10 8 6 13 13 H 1.48503 * 109.47491 * 240.00192 * 10 8 6 14 14 C 1.53782 * 87.08131 * 139.98164 * 4 2 1 15 15 C 1.53773 * 113.61312 * 228.74371 * 2 1 3 16 16 H 1.09004 * 113.62006 * 334.56698 * 15 2 1 17 17 C 1.50697 * 113.61473 * 105.39206 * 15 2 1 18 18 O 1.20827 * 120.00139 * 359.97438 * 17 15 2 19 19 O 1.34229 * 120.00127 * 180.02562 * 17 15 2 20 20 H 1.09004 * 109.47034 * 288.75119 * 1 2 3 21 21 H 1.08999 * 109.46911 * 48.75195 * 1 2 3 22 22 H 1.09002 * 109.47026 * 168.75676 * 1 2 3 23 23 H 1.08993 * 109.47243 * 191.25111 * 3 2 1 24 24 H 1.09002 * 109.46786 * 311.25031 * 3 2 1 25 25 H 1.08997 * 109.47361 * 71.24442 * 3 2 1 26 26 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 27 27 H 1.09002 * 113.61515 * 89.11230 * 14 4 2 28 28 H 1.08999 * 113.61482 * 220.01839 * 14 4 2 29 29 H 0.96705 * 117.00146 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9290 1.0594 5 1 1.4939 -1.7526 1.3502 6 6 2.7253 -0.1958 2.2418 7 1 2.6809 0.8825 2.2833 8 6 3.3065 -0.9020 3.2736 9 7 3.3603 -2.2151 3.2233 10 14 4.0177 0.0064 4.7427 11 1 3.8319 1.4681 4.5583 12 1 3.3196 -0.4288 5.9791 13 1 5.4665 -0.2981 4.8591 14 6 3.1923 -1.3136 0.0001 15 6 2.1460 -0.9291 -1.0592 16 1 1.4945 -1.7537 -1.3488 17 6 2.7236 -0.1963 -2.2426 18 8 2.6727 1.0100 -2.2898 19 8 3.2938 -0.8836 -3.2446 20 1 -0.3633 0.3304 0.9732 21 1 -0.3633 0.6776 -0.7727 22 1 -0.3633 -1.0080 -0.2004 23 1 3.1954 1.3517 -0.2005 24 1 1.6429 2.0077 -0.7727 25 1 1.9627 1.8727 0.9731 26 1 3.7695 -2.7119 3.9491 27 1 4.0711 -0.6687 0.0001 28 1 3.4443 -2.3741 0.0002 29 1 3.6506 -0.3698 -3.9821 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238233028.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:48 Heat of formation + Delta-G solvation = -99.969483 kcal Electronic energy + Delta-G solvation = -13163.893329 eV Core-core repulsion = 10858.657175 eV Total energy + Delta-G solvation = -2305.236154 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.85519 -39.50368 -36.90985 -34.44629 -31.44060 -29.29469 -28.08644 -26.05079 -23.17678 -22.40013 -19.25813 -19.02856 -18.02570 -17.27297 -16.63792 -16.30830 -15.42361 -14.94477 -14.70686 -14.04893 -13.89699 -13.25394 -12.97056 -12.94137 -12.64091 -12.53883 -12.45335 -12.25114 -12.03790 -11.85979 -11.39428 -10.94033 -10.64259 -10.37958 -10.29144 -8.09586 -6.15759 1.30779 1.41335 1.44410 1.54727 2.29467 2.47823 3.20813 3.59927 3.92983 4.08548 4.39597 4.56499 4.67870 4.75188 4.98290 5.02787 5.10463 5.13582 5.27489 5.34918 5.41175 5.54226 5.65440 5.77150 5.87215 5.99656 6.44267 6.92705 7.15032 7.51343 9.00551 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.046339 B = 0.011073 C = 0.010659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.101918 B = 2528.016696 C = 2626.139755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.067 4.067 3 C -0.087 4.087 4 C 0.038 3.962 5 H 0.036 0.964 6 C -0.517 4.517 7 H 0.062 0.938 8 C 0.013 3.987 9 N -0.923 5.923 10 Si 0.946 3.054 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.284 1.284 14 C -0.104 4.104 15 C -0.102 4.102 16 H 0.132 0.868 17 C 0.494 3.506 18 O -0.535 6.535 19 O -0.515 6.515 20 H 0.053 0.947 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.259 0.741 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 2.247 -8.977 9.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.068 4.068 3 C -0.144 4.144 4 C 0.019 3.981 5 H 0.054 0.946 6 C -0.555 4.555 7 H 0.080 0.920 8 C -0.185 4.185 9 N -0.563 5.563 10 Si 0.772 3.228 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.210 1.210 14 C -0.143 4.143 15 C -0.121 4.121 16 H 0.149 0.851 17 C 0.338 3.662 18 O -0.425 6.425 19 O -0.328 6.328 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -2.439 2.204 -8.572 9.180 hybrid contribution 0.895 0.457 0.445 1.099 sum -1.543 2.661 -8.127 8.690 Atomic orbital electron populations 1.21655 0.93283 1.01800 1.01535 1.21920 0.95718 0.94930 0.94189 1.21363 0.99160 0.94605 0.99260 1.19954 0.93001 0.93865 0.91264 0.94635 1.21529 1.36546 0.93511 1.03879 0.91983 1.25720 0.96705 0.95476 1.00607 1.70073 1.45841 1.06792 1.33567 0.85688 0.77952 0.79219 0.79913 1.19217 1.20701 1.21007 1.22800 0.96818 0.99429 0.95214 1.22831 1.00433 1.00246 0.88594 0.85055 1.23633 0.73761 0.86122 0.82709 1.90674 1.56348 1.16724 1.78768 1.84559 1.70274 1.45685 1.32309 0.92803 0.92208 0.91933 0.94903 0.92457 0.94096 0.93158 0.92734 0.92906 0.71752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.23 9.19 71.98 0.66 -3.57 15 2 C -0.07 -2.68 1.20 -51.66 -0.06 -2.74 15 3 C -0.09 -3.55 6.40 71.98 0.46 -3.09 15 4 C 0.04 1.81 2.94 -11.01 -0.03 1.78 15 5 H 0.04 1.85 8.08 -2.39 -0.02 1.83 15 6 C -0.52 -27.73 8.24 25.60 0.21 -27.51 15 7 H 0.06 3.31 5.72 -2.91 -0.02 3.29 15 8 C 0.01 0.73 5.46 84.66 0.46 1.19 15 9 N -0.92 -53.11 13.28 21.45 0.28 -52.82 15 10 Si 0.95 43.54 29.54 68.60 2.03 45.57 15 11 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 14 C -0.10 -4.60 6.83 31.12 0.21 -4.38 15 15 C -0.10 -3.71 3.75 -11.02 -0.04 -3.75 15 16 H 0.13 4.16 7.96 -2.39 -0.02 4.14 15 17 C 0.49 16.58 7.58 71.24 0.54 17.12 15 18 O -0.54 -20.03 13.45 21.96 0.30 -19.74 15 19 O -0.51 -13.53 13.42 -51.41 -0.69 -14.22 15 20 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 21 H 0.06 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.06 1.91 7.94 -2.39 -0.02 1.89 15 23 H 0.03 1.42 6.36 -2.39 -0.02 1.40 15 24 H 0.06 2.20 6.93 -2.39 -0.02 2.18 15 25 H 0.04 1.72 6.50 -2.39 -0.02 1.70 15 26 H 0.26 14.23 8.31 -92.70 -0.77 13.46 15 27 H 0.05 2.54 7.56 -2.39 -0.02 2.52 15 28 H 0.05 2.35 8.14 -2.39 -0.02 2.33 15 29 H 0.42 6.76 9.10 -74.05 -0.67 6.09 15 Total: -1.00 -62.05 241.49 4.81 -57.24 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.48 Total: 8.93 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 2.41 Total: -24.96 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.28 Total: -52.82 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.39 Total: -33.96 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -62.05 4.81 -57.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238233028.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.730 kcal (2) G-P(sol) polarization free energy of solvation -62.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds